Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq75854 129 9e-25 seq246045 89.7 8e-13 seq102355 87.8 3e-12 seq27206 87.8 3e-12 >seq75854 Length=3247 Score = 129 bits (142), Expect = 9e-25 Identities = 164/226 (73%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| | || || ||||| ||||||||||| || | || || ||| | | Sbjct 2566 TGCAGATCTTCGTTAAGACGTTAACTGGAAAAACAATCACATTGGAGGTTGAAAGTTCTG 2507 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || | ||||| || ||| ||||| |||||||| |||||||| ||||||| Sbjct 2506 ATACGATCGACAATGTGAAGGCTAAGATACAGGACAAAGAAGGGATTCCACCGGATCAAC 2447 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | | || || ||||| || || || || || ||| |||||| ||| | |||||||| | Sbjct 2446 AGCGTCTGATCTTTGCTGGAAAGCAGTTGGAGGATGGTAGAACTTTAGCCGATTATAACA 2387 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | ||||| ||||||||| | ||| | || || | || || ||||| Sbjct 2386 TCCAAAAGGAATCGACTTTGCATCTGGTTTTGAGGTTGAGGGGAGG 2341 >seq246045 Length=1351 Score = 89.7 bits (98), Expect = 8e-13 Identities = 137/194 (71%), Gaps = 1/194 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| | || || || || || || ||| |||| | ||||| | || Sbjct 215 TGCAGATCTTCGTTAAGACCTTTACTGGGAATACAGTTACCTTGGATGTTGTGAGCTCCG 274 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATC-AA 146150 | || ||| | || || |||| ||||| ||| |||||| || ||||||||||||| || Sbjct 275 ACACCATTGATAACGTTAAAACCAAAATTCAAGATAAAGAGGGGATTCCACCCGATCAAA 334 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 || || | || |||||||| || ||||| || ||| ||||| || | ||| |||| Sbjct 335 CATAGGTTGATCTTTGCAGGGAAGCAATTGGAAGATGGGAGAACTTTGGCTGATAATAAC 394 Query 146211 ATACAAAAAGAATC 146224 || || || ||||| Sbjct 395 ATCCAGAAGGAATC 408 >seq102355 Length=2708 Score = 87.8 bits (96), Expect = 3e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | ||||| |||| || || || || ||| | || || || | || Sbjct 630 TGCAGATTTTTGTGAAAACCCTAACGGGGAAGACGATAACTCTCGAAGTCGAGAGTTCCG 689 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || | ||||| |||| || ||||| || ||||| ||||| || ||||||| Sbjct 690 ATACGATCGACAATGTTAAAACGAAGATACAGGACAAGGAAGGAATTCCTCCGGATCAAC 749 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | || || || || |||||||| | || || | || | | ||||| |||| Sbjct 750 AACGTCTTATCTTCGCCGGTAAACAGCTCGAAGACGGCCGTACTCTCGCCGATTACAATA 809 Query 146212 TACAAAAAGAATCGACTATCCAT 146234 | |||||||||||||| ||||| Sbjct 810 TCCAAAAAGAATCGACGCTCCAT 832 >seq27206 Length=5223 Score = 87.8 bits (96), Expect = 3e-12 Identities = 137/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| | ||||| |||| || || || |||||| | || || || | || Sbjct 3512 TGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATTACTCTCGAGGTGGAGAGTTCCG 3453 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | ||||| ||| || || || || ||||| ||||| || ||||||| Sbjct 3452 ATACCATTGATAATGTCAAAGCCAAGATCCAGGACAAGGAAGGAATTCCTCCGGATCAAC 3393 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | ||||| || || || || || | || || ||||| || | |||||||||| Sbjct 3392 AACGGCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCAGAACCCTAGCCGATTATAATA 3333 Query 146212 TACAAAAAGAATCGAC 146227 | ||||| || || || Sbjct 3332 TCCAAAAGGAGTCCAC 3317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 777556796941200