Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_023557.1 Length=271084 Score E Sequences producing significant alignments: (Bits) Value seq493767 149 1e-30 seq408088 89.7 9e-13 >seq493767 Length=615 Score = 149 bits (164), Expect = 1e-30 Identities = 284/415 (68%), Gaps = 4/415 (1%) Strand=Plus/Plus Query 71290 AAAAACGATCAGATGGCTGAACCGATGTTCCTGGGTCAGTCGGTTAACGTCTCACGTTAT 71349 |||||| |||| | ||||| ||||| | || || | || || | | || ||| Sbjct 52 AAAAACAATCAACTTAAAGAACCTATGTTTTTTGGACAACCTGTAAATATTGCTCGATAT 111 Query 71350 GATCAGCAGAAGTACCCCGCGTTCGAAAAGCTGATTGAGAAACAACTTTCATTCTTCTGG 71409 |||||||| || || || ||| | || ||||| |||||| | ||||| || ||| Sbjct 112 GATCAGCAAAAATATAATATATTTGAACAACTAATTGAAAAACAATTATCATTTTTTTGG 171 Query 71410 CGACCTGAAGAGGTGGATGTTTCGCAAGACCGTATCGACTTCCAGGGGTTGCCAGATCAT 71469 ||||||| || | ||| |||| ||| || || || || || | || |||||| Sbjct 172 AGACCTGAGGAAATAGATCTTTCTAGAGATCGAATAGATTTTCAAAATCTACCGGATCAT 231 Query 71470 GAAAAACACATCTTCGTTTCTAACCTGAAATACCAAACCCTGCTGGACTCGATTCAGGGT 71529 ||||||||||| || || ||| | ||||| ||||| | || || || ||||| || Sbjct 232 GAAAAACACATTTTTATTAGTAATTTAAAATATCAAACATTACTTGATTCAATTCAAGGA 291 Query 71530 CGTAGCCCGAACGTGGCCTTGCTGCCGATCTGTTCTATCCCGGAACTCGAAACCTGGATT 71589 | || || || | || || | || || |||||| || ||||| ||||| |||||| Sbjct 292 AGAAGTCCTAATATAGCTTTTTTACCTATTATTTCTATTCCAGAACTGGAAACATGGATT 351 Query 71590 GAAACCTGGGCGTTCTCTGAAACGATTCACTCGCGCTCATACACCCACATCATCCGTAAT 71649 ||||| ||| | || || ||||| ||||| || || || || || || || || | ||| Sbjct 352 GAAACATGGTCTTTTTCAGAAACTATTCATTCACGTTCTTATACTCATATAATAAGAAAT 411 Query 71650 A-TCTTTACTGACCCCTCCA-TCGTGTTTGATGACATCGTGACCAACGAACACAT 71702 | | || ||| ||||| || | || |||||||| || | |||| |||| || Sbjct 412 ATTGTTAACT--CCCCTTCACTGGTATTTGATGATATTATTGCCAATCAACATAT 464 >seq408088 Length=780 Score = 89.7 bits (98), Expect = 9e-13 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 165188 TATTGGTCTATAGTTCAGTCGGTAGAACAGCGGACTGTTAATCCGTAGGTCGCTGGTTCG 165247 |||| ||| ||||||||| |||||||| |||||||||||||||||| ||| |||||||| Sbjct 486 TATTCCTCTGTAGTTCAGTTGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCG 427 Query 165248 AATCCAG 165254 ||||||| Sbjct 426 AATCCAG 420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 857842225646400