Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_023561.1 Length=173276 Score E Sequences producing significant alignments: (Bits) Value seq30067 154 2e-32 seq159469 132 5e-26 >seq30067 Length=5021 Score = 154 bits (170), Expect = 2e-32 Identities = 297/438 (68%), Gaps = 0/438 (0%) Strand=Plus/Minus Query 145943 TTGATTTGAACACCGTAATCCAAGTGACGAATTCGGTTTTCATCTACGCCTTTGTTGTTC 146002 || ||||||| | || || | ||||| | || ||||| || | || ||||||| Sbjct 3717 TTAATTTGAATTGCATAGTCGACATGACGTACTCTATTTTCTTCAATTCCCCTGTTGTTT 3658 Query 146003 TTGAGTACGAGGAGGTTTTCAACTTCCAAGTGCCAGATTGGATAGTACAATGTCGCCGCG 146062 || | || | | ||||||||||| || ||||| |||||||| | | || || || Sbjct 3657 TTTAAAACTAATAAATTTTCAACTTCAAAATGCCATATTGGATAAAAAATAGTTGCAGCT 3598 Query 146063 CCACCGCGAACTCCACCTTGGGAGCAAGACTTAACTGCTGTTTGGATGTGTTTCCAGAAA 146122 ||||| | ||| || ||||| || ||||| || || || |||| | ||||| | ||| Sbjct 3597 CCACCTCTAACACCTCCTTGAGAACAAGATTTTACAGCGCTTTGAAAATGTTTATAAAAA 3538 Query 146123 GGAATAACTCCAGTATGCTTGACTTCTCCGAAGCCGATTTTTGAACCTTCTGCACGAATC 146182 || ||| |||||||| |||||||| | || ||| ||| ||||| Sbjct 3537 GGTATACAACCAGTATGAAATGCTTCTCCGTTTCTAATAGGACTTCCTAATGCGCGAATT 3478 Query 146183 ATACCTGCGTTAATGCCGATACCAGCACGTTTAGAGATGTACTCTACAATTGATTCAGCA 146242 ||||| ||||| || || |||||||||| || | || | ||||| || || Sbjct 3477 TGTCCTGCATTAATACCAATTCCAGCACGTTGGGAAACATATTTAACAATAGAGCTAGTT 3418 Query 146243 GATTTGTTAATTGATTTCAGTGAATCACCAGCTTCAATAACAACGCAAGAACTGAATTGA 146302 | ||||| || || | |||| || |||||| | ||| |||||||| |||||| Sbjct 3417 GTCGCATTAATGGAATTTAAATTATCAGCACATTCAATTAAAACACAAGAACTAAATTGA 3358 Query 146303 CGAGTAGGAGTACGAGCACCTGCCATAATAGGAGTAGGCAGAGAAATTTTCTTAGTTGAC 146362 ||||||||||| | | || | |||||| || || || | |||||||| ||| || Sbjct 3357 CGAGTAGGAGTTCTGACTCCAGACATAATTGGTGTTGGTAATGAAATTTTAAAAGTAGAA 3298 Query 146363 ACAGCATCGTAAAAACGA 146380 | ||||| |||||||||| Sbjct 3297 ATAGCATTGTAAAAACGA 3280 >seq159469 Length=1977 Score = 132 bits (146), Expect = 5e-26 Identities = 294/440 (67%), Gaps = 6/440 (1%) Strand=Plus/Plus Query 145943 TTGATTTGAACACCGTAATCCAAGTGACGAATTCGGTTTTCATCTACGCCTTTGTTGTTC 146002 || ||||||| ||||||| | ||||| | || ||||| || | ||| | || || Sbjct 1292 TTAATTTGAAGTGCGTAATCAATATGACGCACTCTATTTTCTTCAATTCCTCTATTATTT 1351 Query 146003 TTGAGTACGAGGAGGTTTTCAACTTCCAAGTGCCAGATTGGATAGTACAATGTCGCCGCG 146062 || | || | | |||||||||| || ||||| |||||||| | | || || || Sbjct 1352 TTTAAAACTAATAAACTTTCAACTTCAAAATGCCATATTGGATAAAAAATAGTTGCAGCT 1411 Query 146063 CCACCGCGAACTCCACCTTGGGAGCAAGACTTAACTGCTGTTTGGATGTGTTTCCAGAAA 146122 || || | ||||| ||||| || || || || || || |||| | |||||| | ||| Sbjct 1412 CCTCCTCTCACTCCGCCTTGTGAACAGGATTTTACGGCACTTTGAAAGTGTTTATAAAAA 1471 Query 146123 GGAATAACTCCAGTATGCTTGACTTCTCCGAAGCCGATTTTTGAACCTTCT---GCACGA 146179 || ||| |||||||| |||| ||| | || | || | || || ||| Sbjct 1472 GGTATACAACCAGTATGAAATGCTTCACCGTTTCTAATA---GGACTTCCTAACGCGCGA 1528 Query 146180 ATCATACCTGCGTTAATGCCGATACCAGCACGTTTAGAGATGTACTCTACAATTGATTCA 146239 || || || ||||| ||||| |||||||||| || | || | ||||| || | Sbjct 1529 ATTTGTCCCGCATTAATACCGATTCCAGCACGTTGTGATACATATTTAACAATAGAGCTA 1588 Query 146240 GCAGATTTGTTAATTGATTTCAGTGAATCACCAGCTTCAATAACAACGCAAGAACTGAAT 146299 | || ||||| || || | |||| || ||| || | ||| |||||||| || Sbjct 1589 GTAGTAGCATTAATAGAGTTTAAATTATCAGCACATTCGATTAAAACACAAGAACTAAAC 1648 Query 146300 TGACGAGTAGGAGTACGAGCACCTGCCATAATAGGAGTAGGCAGAGAAATTTTCTTAGTT 146359 |||||||||||||| || | || | |||||| || || || | |||||||| ||| Sbjct 1649 TGACGAGTAGGAGTTCGTACTCCAGACATAATGGGTGTTGGTAATGAAATTTTAAAAGTA 1708 Query 146360 GACACAGCATCGTAAAAACG 146379 || | |||| |||||||| Sbjct 1709 GAAATTGCATTATAAAAACG 1728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548284248321600