Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_023568.1 Length=246964 Score E Sequences producing significant alignments: (Bits) Value seq30067 143 4e-29 seq159469 141 1e-28 >seq30067 Length=5021 Score = 143 bits (158), Expect = 4e-29 Identities = 288/423 (68%), Gaps = 8/423 (2%) Strand=Plus/Plus Query 78628 TTCTACAATGCAGTTTCGACTCACAAACTTTCATTACCGACACCGATTATGGCAGGCGTT 78687 || |||||||| |||| ||| ||| |||||||||| ||||| |||||| | || || Sbjct 3284 TTTTACAATGCTATTTCTACTTTTAAAATTTCATTACCAACACCAATTATGTCTGGAGTC 3343 Query 78688 CGTACCCCGACACGCCAGTTTAGTTCGTGTGTTAAGATTGAATCAGGCGACTCTTTGCAT 78747 | || || || || || |||||||| |||||| ||||||| | || ||| || Sbjct 3344 AGAACTCCTACTCGTCAATTTAGTTCTTGTGTTTTAATTGAATGTGCTGATAATTTAAAT 3403 Query 78748 TCAATCAATGAAGTGGCTAAATCAATTGTAAGTTACATTAGTAAGCGTGCAGGTATCGGT 78807 || || |||| ||| || ||||| | || || | ||||| || || ||| Sbjct 3404 TCCATTAATGCGACAACTAGCTCTATTGTTAAATATGTTTCCCAACGTGCTGGAATTGGT 3463 Query 78808 GTTAACGGCGGTGCGATTCGTGCTGAAGGGGCAGTCGT--TCGTTCAGGTGAG--ATTCG 78863 |||| | || ||||| || ||| |||| | | | || || ||| Sbjct 3464 ATTAATGCAGGACAAATTCGCGCATTAGGA--AGTCCTATTAGAAACGGAGAAGCATT-- 3519 Query 78864 TCACACTGGTGTAATTCCATTCTGGAAACACTTTCAAACTGCGGTTAAATCGTGTTCTCA 78923 ||| |||||| || || || | ||||| ||||||| || || ||||| |||||||| Sbjct 3520 TCATACTGGTTGTATACCTTTTTATAAACATTTTCAAAGCGCTGTAAAATCTTGTTCTCA 3579 Query 78924 AGGTGGTGTACGTGGGGGTGCTGCGACTCTAACTTACCCGATTTGGCACTTAGAAGTTGA 78983 ||| ||||| | || || ||||| ||| | ||| || || ||||| || |||||||| Sbjct 3580 AGGAGGTGTTAGAGGTGGAGCTGCAACTATTTTTTATCCAATATGGCATTTTGAAGTTGA 3639 Query 78984 AAAACTGTTAGTTCTGAAGAACAACAAAGGTGTTGAAGAAAACCGTATTCGTCATCTTGA 79043 ||| | |||||| | || ||||||| || |||||||||| | | |||||| | || Sbjct 3640 AAATTTATTAGTTTTAAAAAACAACAGGGGAATTGAAGAAAATAGAGTACGTCATGTCGA 3699 Query 79044 CTA 79046 ||| Sbjct 3700 CTA 3702 >seq159469 Length=1977 Score = 141 bits (156), Expect = 1e-28 Identities = 291/428 (68%), Gaps = 16/428 (4%) Strand=Plus/Minus Query 78628 TTCTACAATGCAGTTTCGACTCACAAACTTTCATTACCGACACCGATTATGGCAGGCGTT 78687 || || |||||| |||| ||| ||| |||||||||| ||||| |||||| | || || Sbjct 1725 TTTTATAATGCAATTTCTACTTTTAAAATTTCATTACCAACACCCATTATGTCTGGAGTA 1666 Query 78688 CGTACCCCGACACGCCAGTTTAGTTCGTGTGTTAAGATTGAATCAGGCGACTCTTTGCAT 78747 || || || || || ||||||||||| |||||| || |||| | || ||| | Sbjct 1665 CGAACTCCTACTCGTCAGTTTAGTTCTTGTGTTTTAATCGAATGTGCTGATAATTTAAAC 1606 Query 78748 TCAATCAATGAAGTGGCTAAATCAATTGTAAGTTACATTAGTA----AGCGTGCAGGTAT 78803 || || |||| ||| || ||||| || || ||| | ||||| || || Sbjct 1605 TCTATTAATGCTACTACTAGCTCTATTGT----TAAATATGTATCACAACGTGCTGGAAT 1550 Query 78804 CGGTGTTAACGGCGGTGCGATTCGTGCTGAAGGGGCAGTCGT--TCGTTCAGGTGAG--A 78859 |||| |||| | || ||||| || ||| |||| | | | ||||| | Sbjct 1549 CGGTATTAATGCGGGACAAATTCGCGCGTTAGGA--AGTCCTATTAGAAACGGTGAAGCA 1492 Query 78860 TTCGTCACACTGGTGTAATTCCATTCTGGAAACACTTTCAAACTGCGGTTAAATCGTGTT 78919 || ||| |||||| || || || | ||||||||||||| ||| || ||||| |||| Sbjct 1491 TT--TCATACTGGTTGTATACCTTTTTATAAACACTTTCAAAGTGCCGTAAAATCCTGTT 1434 Query 78920 CTCAAGGTGGTGTACGTGGGGGTGCTGCGACTCTAACTTACCCGATTTGGCACTTAGAAG 78979 | ||||| || || | || || ||||| ||| | ||| || || ||||| || |||| Sbjct 1433 CACAAGGCGGAGTGAGAGGAGGAGCTGCAACTATTTTTTATCCAATATGGCATTTTGAAG 1374 Query 78980 TTGAAAAACTGTTAGTTCTGAAGAACAACAAAGGTGTTGAAGAAAACCGTATTCGTCATC 79039 |||||| | |||||| | || || || | ||| |||||||||| | | |||||| Sbjct 1373 TTGAAAGTTTATTAGTTTTAAAAAATAATAGAGGAATTGAAGAAAATAGAGTGCGTCATA 1314 Query 79040 TTGACTAC 79047 |||| ||| Sbjct 1313 TTGATTAC 1306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 781503496574400