Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_023581.1 Length=77792 Score E Sequences producing significant alignments: (Bits) Value seq21362 104 1e-17 seq243076 82.4 4e-11 >seq21362 Length=5695 Score = 104 bits (114), Expect = 1e-17 Identities = 151/211 (72%), Gaps = 3/211 (1%) Strand=Plus/Minus Query 37968 GAAAAC--TAAGCTGTCAGTTATATCAACGTAGTGCTGATTTCTTCTTAGGTGTTCCATT 38025 |||||| |||| ||||| |||||||||||| | |||| | || | || | || || Sbjct 341 GAAAACATTAAGTTGTCAATTATATCAACGTTCTTGTGATGTATTTCTTGGATTACCTTT 282 Query 38026 TAATATTGCAAGCTATGCGTTGCTTACACATATCGTAGCTGCAGAATGTGGATTAGAAGT 38085 |||||| || || ||| | | |||| |||||| |||| | ||||| ||| |||| Sbjct 281 TAATATAGCTAGTTATTCAATACTTATACATATGATAGCACAACAATGTAATTTAAAAGT 222 Query 38086 TGGTGAATTTGTCTGGACTGGTGGTGTAGTTCACCTGTACAGTAATCACCTTGAGCAAGC 38145 ||| |||||| | ||||| || |||| ||||| || || | ||||| |||| | ||| Sbjct 221 TGGAGAATTTTTATGGACAGGAGGTGATGTTCATCTATATAACAATCATTTTGAACTAGC 162 Query 38146 TAAAAAACAATTAAGTCGTCCACCT-GAAAA 38175 |||||||| || | | ||||| ||||| Sbjct 161 ACAAAAACAAATACTTAGAACACCTCGAAAA 131 >seq243076 Length=1367 Score = 82.4 bits (90), Expect = 4e-11 Identities = 172/254 (68%), Gaps = 2/254 (1%) Strand=Plus/Plus Query 37906 TGAAGTAGATAAGGCAGCATTGCCACCTTGTCATACATTGTTCCAGTTCTTTGTAGAGAA 37965 |||| ||||||| ||| || ||||||||| | || || || | ||| || Sbjct 885 TGAAATAGATAACATGAGATTACCTCCTTGTCATGTTCTTTTTCAATTTTATGTTTTTAA 944 Query 37966 TGGAAAACTAAGCTGTCAGTTATATCAACGTAGTGCTGATTTCTTCTTAGGTGTTCCATT 38025 || |||||||||||| | || ||||| | |||| | || |||| | || || Sbjct 945 AAAAACACTAAGCTGTCAACTTTACCAACGCTCTTGTGATGTATTTCTAGGACTCCCTTT 1004 Query 38026 TAATATTGCAAGCTATGCGTTGCTTACACATATCGTAGCTGCAG-AATGTGGATTAGAAG 38084 |||||| || || ||| | |||| |||||| |||| ||| ||| | ||| ||| Sbjct 1005 TAATATAGCTAGTTATTCAATGCTACTACATATGATAGC-ACAGCAATCTAATTTAAAAG 1063 Query 38085 TTGGTGAATTTGTCTGGACTGGTGGTGTAGTTCACCTGTACAGTAATCACCTTGAGCAAG 38144 |||| |||||| | ||||| ||||||| || || | || | ||||| |||| || Sbjct 1064 TTGGAGAATTTTTATGGACAGGTGGTGATGTGCATTTATATAAAAATCATATTGAATTAG 1123 Query 38145 CTAAAAAACAATTA 38158 | ||||||||| || Sbjct 1124 CAAAAAAACAAATA 1137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 246152912947630