Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq102355 107 2e-18 seq40887 95.1 1e-14 seq90319 89.7 5e-13 seq50039 89.7 5e-13 >seq102355 Length=2708 Score = 107 bits (118), Expect = 2e-18 Identities = 164/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 |||||| || | ||| | ||| | ||| | || ||||||||||| || ||||||||| Sbjct 856 GCCTCCACGAAGACGGAGAACGAGATGGAGCGTCGATTCTTTTTGGATATTGTAATCGGC 797 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 | || | ||||||||| |||||||| || |||| |||||||| ||||| ||||| Sbjct 796 GAGAGTACGGCCGTCTTCGAGCTGTTTACCGGCGAAGATAAGACGTTGTTGATCCGGAGG 737 Query 137304 TATGCCTTCTTTGT-CGGTAATTTTTTGTTTTAGC-TGTTCCACCGTGTCTGTGGGTTCT 137361 || ||||| |||| | ||| | || |||||| | | || | ||| || | || Sbjct 736 AATTCCTTCCTTGTCCTGTA--TCTTCGTTTTAACATTGTCGATCGTATCGGAACTCTCG 679 Query 137362 ACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 ||||| | ||| | |||||| || || | ||||| || || || ||||| Sbjct 678 ACTTCGAGAGTTATCGTCTTCCCCGTTAGGGTTTTCACAAAAATCTGCAT 629 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||| || | ||| | || | ||||| || || || ||||| |||||||| ||| Sbjct 1083 CCTCCACGAAGACGAAGGACGAGATGAAGCGTTGACTCCTTTTGGATGTTGTAGTCGGCG 1024 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || | ||| || || |||||||| || |||| |||||||||||||||||||| Sbjct 1023 AGGGTACGGCCGTCCTCAAGCTGTTTACCGGCGAAGATGAGACGTTGCTGATCGGGAGGG 964 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||| ||||| ||| ||| || | | || | ||||| | | || || Sbjct 963 ATTCCTTCCTTGTCTTGAATCTTTGTCTTCACGTTGTCGATTGTGTCCGAGCTCTCCACC 904 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | || | |||||| ||||||| ||||| ||||| |||||||| Sbjct 903 TCCAACGTGATCGTCTTTCCGGTCAGGGTTTTGACGAAGATTTGCAT 857 >seq40887 Length=4418 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||||| || || | ||| | |||| || ||||| ||||| |||||||||||| | Sbjct 2071 CCTCCTCTCAATCGAAGAACGAGGTGAAGAGTTGATTCCTTTTGGATGTTGTAATCGGCC 2012 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | |||| |||||| || || || || || |||| || | ||| || || || || Sbjct 2011 AAGGTGCGGCCGTCTTCTAGCTGCTTTCCGGCGAAGATAAGCCTTTGTTGGTCTGGGGGA 1952 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||| ||||| |||||| || | | || | || |||| | || ||| Sbjct 1951 ATCCCTTCCTTGTCCTGGATTTTTGCCTTGACGTTGTCAATGGTATCTGAGCTCTCGACT 1892 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | ||| | |||||| ||||| | || |||||||| || ||||| Sbjct 1891 TCGAGAGTGATCGTCTTTCCGGTGAGAGTCTTTACGAAGATCTGCAT 1845 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||| || | ||| | || | ||| | ||||| || || || ||||| || || | Sbjct 2755 CCTCCACGGAGACGGAGGACAAGATGGAGGGTAGACTCCTTCTGGATGTTATAGTCCGCC 2696 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | ||| | ||| ||||| ||||| || || |||| ||||||||||| || || || Sbjct 2695 AATGTCCGGCCGTCCTCGAGCTGTTTTCCGGCGAAGATGAGACGTTGCTGGTCTGGGGGA 2636 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||| ||||| |||||| ||| | | || | ||||| | | ||| ||| Sbjct 2635 ATACCTTCCTTGTCTTGAATTTTAGCTTTGACGTTGTCAATGGTGTCGGAGCTTTCCACT 2576 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 137415 || | || | || || |||||||| ||||| || || || |||||| || Sbjct 2575 TCCAAGGTGATTGTTTTTCCGGTCAAGGTTTTCACAAAGATCTGCATACCT 2525 >seq90319 Length=2932 Score = 89.7 bits (98), Expect = 5e-13 Identities = 159/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 ||| || || | ||| | || ||||| | || || || ||||| |||||||| ||| Sbjct 1398 GCCACCACGGAGACGGAGGACCAAATGGAGGGTTGACTCCTTTTGGATGTTGTAGTCGGC 1457 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 | || | |||||| || ||||| || || |||||| | ||||||||| || || Sbjct 1458 GAGGGTACGGCCGTCTTCTAGCTGTTTTCCGGCGAAGATCAATCTTTGCTGATCTGGGGG 1517 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 || ||||| ||||| || || ||| | | || | ||||| | | ||| || Sbjct 1518 GATACCTTCCTTGTCTTGGATCTTGGCTTTCACGTTATCGATGGTGTCGGAGCTTTCGAC 1577 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 137415 || | ||| | ||||| ||||| | ||||| ||||||||||||||| || Sbjct 1578 CTCGAGAGTGATGGTCTTTCCGGTAAGAGTTTTGACGAATATTTGCATACCT 1629 >seq50039 Length=4031 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274 || ||||| || || |||||||| ||| | || || ||| || || ||||| || Sbjct 1018 GTGGATTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCTGTCGTCCTCCAGCTGTTTTCCG 1077 Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 137334 || |||| ||||||||||||| || || |||||||| ||||| ||||| ||| Sbjct 1078 GCGAAGATGTGACGTTGCTGATCCGGTGGGATGCCTTCCTTGTCTTGGATTTTCGCTTTG 1137 Query 137335 AGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 137394 | | || | ||||| | || |||||| || | || | || || ||||| | ||| Sbjct 1138 ACATTGTCGATGGTGTCGGAGGATTCTACCTCTAGGGTGATGGTTTTCCCGGTTAGGGTT 1197 Query 137395 TTTACGAATATTTGCAT 137411 |||||||| || ||||| Sbjct 1198 TTTACGAAAATCTGCAT 1214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483193771452000