Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_023688.1 Length=222006 Score E Sequences producing significant alignments: (Bits) Value seq30067 134 2e-26 seq159469 129 8e-25 >seq30067 Length=5021 Score = 134 bits (148), Expect = 2e-26 Identities = 271/402 (67%), Gaps = 0/402 (0%) Strand=Plus/Minus Query 32811 TTTATTGATTTGGATACCGTAGTCCAAGTGTCTGATTCGATTTTCTTCCACACCCTTGTT 32870 |||||| ||||| || | ||||| | || | | || ||||||||| | ||| |||| Sbjct 3721 TTTATTAATTTGAATTGCATAGTCGACATGACGTACTCTATTTTCTTCAATTCCCCTGTT 3662 Query 32871 GTTCTTGAGCACAAGGATTTTTTCAACTTCAAGATGCCACATCGGATAATACAGAGTAGC 32930 ||| || | || | | ||||||||||||| |||||| || |||||| | | ||| || Sbjct 3661 GTTTTTTAAAACTAATAAATTTTCAACTTCAAAATGCCATATTGGATAAAAAATAGTTGC 3602 Query 32931 AGCGCCACCACGTACACCGCCCTGTGAGCAGCTTTTTACCGCAGTCTGAAAGTATTTCCA 32990 ||| ||||| | ||||| || || || || |||||| || | ||||| | ||| | Sbjct 3601 AGCTCCACCTCTAACACCTCCTTGAGAACAAGATTTTACAGCGCTTTGAAAATGTTTATA 3542 Query 32991 GAATGGGATAATACCAGTATGACGAACCTCGCCAGAACGAATTCTAGAGCCTTCAGCACG 33050 || || ||| |||||||||| | || || | ||| | ||| || || Sbjct 3541 AAAAGGTATACAACCAGTATGAAATGCTTCTCCGTTTCTAATAGGACTTCCTAATGCGCG 3482 Query 33051 AATAGCACCACCATTGATACCGATACCAGCTCTCTTGCTGATATAGTCAACGATAGAACT 33110 ||| || |||| ||||| || ||||| | | | | ||| | ||| ||||| || Sbjct 3481 AATTTGTCCTGCATTAATACCAATTCCAGCACGTTGGGAAACATATTTAACAATAGAGCT 3422 Query 33111 AGCGGTTGCGTTAATGCTATCGAGTTCATCACCACTTTCAATCTTGACGCATGAGCTAAA 33170 || || || |||||| || | | |||| ||| |||||| || || || ||||| Sbjct 3421 AGTTGTCGCATTAATGGAATTTAAATTATCAGCACATTCAATTAAAACACAAGAACTAAA 3362 Query 33171 CTGACGGGTCGGAGTACGAACACCAGCCAGAATAGGAGTCGG 33212 ||||| || ||||| | || |||| || ||| || || || Sbjct 3361 TTGACGAGTAGGAGTTCTGACTCCAGACATAATTGGTGTTGG 3320 >seq159469 Length=1977 Score = 129 bits (142), Expect = 8e-25 Identities = 273/404 (68%), Gaps = 4/404 (1%) Strand=Plus/Plus Query 32811 TTTATTGATTTGGATACCGTAGTCCAAGTGTCTGATTCGATTTTCTTCCACACCCTTGTT 32870 |||||| ||||| | |||| || | || | | || ||||||||| | || | || Sbjct 1288 TTTATTAATTTGAAGTGCGTAATCAATATGACGCACTCTATTTTCTTCAATTCCTCTATT 1347 Query 32871 GTTCTTGAGCACAAGGATTTTTTCAACTTCAAGATGCCACATCGGATAATACAGAGTAGC 32930 || || | || | | |||||||||||| |||||| || |||||| | | ||| || Sbjct 1348 ATTTTTTAAAACTAATAAACTTTCAACTTCAAAATGCCATATTGGATAAAAAATAGTTGC 1407 Query 32931 AGCGCCACCACGTACACCGCCCTGTGAGCAGCTTTTTACCGCAGTCTGAAAGTATTTCCA 32990 ||| || || | || ||||| ||||| ||| |||||| ||| | ||||||| ||| | Sbjct 1408 AGCTCCTCCTCTCACTCCGCCTTGTGAACAGGATTTTACGGCACTTTGAAAGTGTTTATA 1467 Query 32991 GAATGGGATAATACCAGTATGACGAACCTCGCCAGAACGAATTCTAGAGCCTTCAGCACG 33050 || || ||| |||||||||| | || || | ||| | ||| || || Sbjct 1468 AAAAGGTATACAACCAGTATGAAATGCTTCACCGTTTCTAATAGGACTTCCTAACGCGCG 1527 Query 33051 AATAGCACCACCATTGATACCGATACCAGCTCTCTTGCTGAT--ATAGTCAACGATAGAA 33108 ||| || |||| |||||||| ||||| | ||| |||| ||| | ||| ||||| Sbjct 1528 AATTTGTCCCGCATTAATACCGATTCCAGCAC-GTTG-TGATACATATTTAACAATAGAG 1585 Query 33109 CTAGCGGTTGCGTTAATGCTATCGAGTTCATCACCACTTTCAATCTTGACGCATGAGCTA 33168 |||| || || ||||| | | | |||| ||| ||| || || || || ||| Sbjct 1586 CTAGTAGTAGCATTAATAGAGTTTAAATTATCAGCACATTCGATTAAAACACAAGAACTA 1645 Query 33169 AACTGACGGGTCGGAGTACGAACACCAGCCAGAATAGGAGTCGG 33212 |||||||| || ||||| || || |||| || ||| || || || Sbjct 1646 AACTGACGAGTAGGAGTTCGTACTCCAGACATAATGGGTGTTGG 1689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 702512534709600