Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_023719.1 Length=497513 Score E Sequences producing significant alignments: (Bits) Value seq45402 309 1e-78 seq195296 266 1e-65 seq189118 93.3 1e-13 >seq45402 Length=4215 Score = 309 bits (342), Expect = 1e-78 Identities = 657/967 (68%), Gaps = 29/967 (3%) Strand=Plus/Plus Query 188635 GATAATCATATTATTGGACAAGAAAAAGCAAAACGTCAATTAGCTGTATCAGTTTATAAT 188694 |||||| || | ||||||||||| | ||||| ||| |||| ||||||||||| Sbjct 298 GATAATTATGTAATTGGACAAGATTATACAAAAAAAGTTTTATCTGTTGCAGTTTATAAT 357 Query 188695 CATTATAAGCGCATTAATGCTCTTAATGaaaaatcaaaaaatgatgatggagtaaagatc 188754 |||||||| || || || | ||||| |||||| ||| ||| || | Sbjct 358 CATTATAAACGTCTTCATAATTTTAAT---------AAAAATACGGATTCAGTTGAGTTA 408 Query 188755 aaaaaaTCTAATGTTCTTTTAGTTGGCCCTACTGGTTCAGGTAAAACATTATTTGCTCAA 188814 ||| ||| || | ||| | || || || ||| || ||||||||||| || ||| Sbjct 409 GGTAAAAGTAACATTTTATTAATAGGGCCAACAGGTAGTGGAAAAACATTATTAGCACAA 468 Query 188815 ACATTGGCTGATATGTTACATGTACCTCTAGCTATCTCTGATGCAACTTCTTTAACAGAA 188874 ||||| ||| | | || | || || | |||| | ||||| || || | || ||| Sbjct 469 ACATTAGCTAAATTACTAGACGTTCCATTCACTATTGCAGATGCTACAACTCTGACTGAA 528 Query 188875 GCTGGTTATGTAGGTGAAGATGTGGAAAACGTATTGCTTCGTTTAATCCAAGCAGCTGAT 188934 ||||| |||||||| |||||||| || |||||| | | || | ||| | | | Sbjct 529 GCTGGATATGTAGGAGAAGATGTAGAGAACGTAATACAAAAACTATTACAAAAATGTAAA 588 Query 188935 TACGATATCGAATTAGCGGAACGTGGAATTGTATATATCGATGAAGTAGATAAAATTGCT 188994 ||| || | || ||| ||| || ||||| ||||| |||||| |||||||||| || Sbjct 589 TACAATGTAAAAAAAGCAGAATTAGGTATTGTTTATATAGATGAAATAGATAAAATAGCA 648 Query 188995 AGAAAATCAGAAAGCACATCCATTACCCGAGATGTATCTGGCGAAGGAGTACAGCAAGCT 189054 |||||||| || | | || ||||| ||||||||||||| |||||||||||||||||| Sbjct 649 AGAAAATCTGATAATCCTTCAATTACTAGAGATGTATCTGGAGAAGGAGTACAGCAAGCT 708 Query 189055 TTATTAAAAATCATTGAAGGTACAGTTGCGAAAGTTCCTCCTCAAGGTGGTCGTAAACAC 189114 ||||||| | |||||||| ||| | || ||||||||||||| || || ||||| Sbjct 709 CTATTAAAGTTAATTGAAGGAACATTAGCTTCTATTCCTCCTCAAGGAGGACGAAAACAT 768 Query 189115 CCTCACCAAGAAATGCTTGAAATAGATACAACTAATATCTTGTTTATTCTTGGTGGAGCG 189174 || || |||||| | | || || | || | ||||| || ||||| || ||| || Sbjct 769 CCACAACAAGAATTTTTGCAAGTAAACACGTCAAATATTTTATTTATATGTGCTGGTGCA 828 Query 189175 TTT----GATGGTCTTGAAAACATTATCAAGAGACGCGCTACAAAATCAACTTTAGGTTT 189230 ||| || || | ||| ||| || |||| | |||| | || ||||||| Sbjct 829 TTTTCAGAATTATC-TAAAATTATTTCTAAAAGACTTGATACAGGAACAGAAATAGGTTT 887 Query 189231 TGATGATAGTGTAGATAAAGTACAAGAAGAAATCAAGGAT--GACAATAAAGTATTCCAA 189288 | | | || || ||||||| || |||||| || || || || |||| || Sbjct 888 TAACGCTAACGT---TAAAGTA-AAAAAGAAA-AAAATATCAGAAGATTTTTTATTAAAA 942 Query 189289 CATCTTCAACCGCAAGATATTGTTAAGTATGGTTTAATTCCAGAATTTATTGGGCGTGTA 189348 || | |||| ||||| | | || | ||| |||||||||||||||||| | || | Sbjct 943 CAAGTAGAACCTGAAGATTTAATAAAATTTGGATTAATTCCAGAATTTATTAGTCGATTG 1002 Query 189349 CCAGTAATCGCAACTCTTAACAAACTTGA-TCGAGATGCATTGATTAACATTTTAACTGA 189407 ||| |||| | | | |||| | || | | ||||||||| |||||||| ||| | Sbjct 1003 CCAATAATAACTA-TATTAAATGAATTAACTGAAGATGCATTAATTAACATATTATGCAA 1061 Query 189408 GCCGCAAAACGCTATCATTAAACAATATCAGAAATTGTTAGATATGGATGGCGTGGAATT 189467 ||| |||||||| | |||||||||||| | | ||| || | | || || | || Sbjct 1062 GCCTAAAAACGCTTTAATTAAACAATATAAAACATTATTCGCCTTAGAAAAAGTACAGTT 1121 Query 189468 AGAATTCCAAAAAGAAGC-ATTAGAATCAATTGCAGATGAAGCGATTGAACGTAATACTG 189526 |||||| | | |||| | |||| | | |||||| |||| || | || || | Sbjct 1122 AGAATTTAATACAGAATCTATTA-TAGCTATTGCAAGAAAAGCTATGAATAAAAAGACAG 1180 Query 189527 GTGCTCGCGGATTACAATCCATTATTGAAA--ATATTATGTTAGATGTAATGTATGAAGT 189584 ||||| | ||||||| ||| |||||||||| ||| | | ||| || ||||||||||| | Sbjct 1181 GTGCTAGAGGATTACGATCTATTATTGAAAGCATACT-TCTTA-ATATAATGTATGAATT 1238 Query 189585 TCCAGCT 189591 ||| || Sbjct 1239 ACCATCT 1245 >seq195296 Length=1673 Score = 266 bits (294), Expect = 1e-65 Identities = 646/970 (67%), Gaps = 35/970 (4%) Strand=Plus/Minus Query 188635 GATAATCATATTATTGGACAAGAAAAAGCAAAACGTCAATTAGCTGTATCAGTTTATAAT 188694 |||||| || | || |||||||| | ||||| ||| |||| || ||||||||| Sbjct 1333 GATAATTATGTAATCGGACAAGATCATACAAAAAAGATTTTATCTGTTTCTGTTTATAAT 1274 Query 188695 CATTATAAGCGCATTAATGCTCTTAATGaaaaatcaaaaaatgatgatggagtaaagatc 188754 || ||||| || || | | ||| | | |||| | |||| ||| | | Sbjct 1273 CACTATAAACGTCTTCGTAATTTTAGT---------ACAAATAAAGATGTAGTTGAATTA 1223 Query 188755 aaaaaaTCTAATGTTCTTTTAGTTGGCCCTACTGGTTCAGGTAAAACATTATTTGCTCAA 188814 |||| |||| || | ||| | || || |||||| |||||||||||| | || ||| Sbjct 1222 GGAAAAAGTAATATTTTGTTAATCGGACCCACTGGTAGTGGTAAAACATTACTAGCACAA 1163 Query 188815 ACATTGGCTGATATGTTACATGTACCTCTAGCTATCTCTGATGCAACTTCTTTAACAGAA 188874 ||| | || | | ||| |||| ||| | |||| | ||||| ||| || |||||||| Sbjct 1162 ACACTTGCGAAATTATTAGATGTGCCTTTTACTATTGCAGATGCTACTACTCTAACAGAA 1103 Query 188875 GCTGGTTATGTAGGTGAAGATGTGGAAAACGTATTGCTTCGTTTAATCCAAGCAGCTGAT 188934 || || |||||||| |||||||| ||||| || | | || | ||| || | | Sbjct 1102 GCAGGATATGTAGGAGAAGATGTTGAAAATGTCATACAAAAACTATTACAAACATGTAAG 1043 Query 188935 TACGATATCGAATTAGCGGAACGTGGAATTGTATATATCGATGAAGTAGATAAAATTGCT 188994 ||| | | || ||| ||| || ||||| |||||||||||| ||||||||||| | Sbjct 1042 TACAACGTAAAAAAAGCAGAATTAGGCATTGTTTATATCGATGAAATAGATAAAATTTCA 983 Query 188995 AGAAAATCAGAAAGCACATCCATTACCCGAGATGTATCTGGCGAAGGAGTACAGCAAGCT 189054 ||||||||||| | | || || ||| ||||||| |||||||||||||| || |||||| Sbjct 982 AGAAAATCAGATAATCCTTCTATCACCAGAGATGTTTCTGGCGAAGGAGTTCAACAAGCT 923 Query 189055 TTATTAAAAATCATTGAAGGTACAGTTGCGAAAGTTCCTCCTCAAGGTGGTCGTAAACAC 189114 ||||||||| | |||||||| || | || ||||||||||||| || || ||||| Sbjct 922 TTATTAAAATTAATTGAAGGAACGCTGGCATCTATTCCTCCTCAAGGAGGACGGAAACAT 863 Query 189115 CCTCACCAAGAAATGCTTGAAATAGATACAACTAATATCTTGTTTATTCTTGGTGGAGCG 189174 ||||| |||||| | || || | ||||| | ||||| || || || || |||||| Sbjct 862 CCTCAACAAGAATTTCTACAAGTCAATACATCCAATATTTTATTCATATGTGCTGGAGCA 803 Query 189175 TTT----GATGGTCTTGAAAACATTATC---AAG---AGACGCGCTACAAAATCAACTTT 189224 ||| ||| ||| |||| | || ||| ||||| | || | || | Sbjct 802 TTTTCGGGATTATCT--AAAATTATTTCTAAAAGATTAGACGTG--GGAACAGAAA---T 750 Query 189225 AGGTTTTGATGATAGTG-TAGATAAAGTACA-AGAAGAAATCAAGGATGACAATAAAGTA 189282 ||||||| ||| | || || || || | | || |||||| || || || Sbjct 749 AGGTTTTAATGCTTCTGTTAAGGAATCTAAACAAAAAAAATCA-----GAAGATTTTTTA 695 Query 189283 TTCCAACATCTTCAACCGCAAGATATTGTTAAGTATGGTTTAATTCCAGAATTTATTGGG 189342 | || | | | || ||||| | | || | ||| |||||||| ||||||||||| Sbjct 694 CTAAAAAAAGTAGAGCCTAAAGATTTAATAAAATTTGGATTAATTCCTGAATTTATTGGT 635 Query 189343 CGTGTACCAGTAATCGCAACTCTTAACAAACTTGATCGAGATGCATTGATTAACATTTTA 189402 ||| |||| | || | | | || || | | ||||||||| || | || ||| Sbjct 634 CGTTTACCCATCATTACTATATTGAATGAATTAACTAAAGATGCATTAGTTGAAATATTA 575 Query 189403 ACTGAGCCGCAAAACGCTATCATTAAACAATATCAGAAATTGTTAGATATGGATGGCGTG 189462 | || |||| ||| | |||||||| ||||| | |||||| | | || || Sbjct 574 TGCAAACCCAAAAATGCTTTAATTAAACAGTATCAAATATTGTTTAAATTAGAAAAAGTA 515 Query 189463 GAATTAGAATTCCAAAAAGAAGC-ATTAGAATCAATTGCAGATGAAGCGATTGAACGTAA 189521 |||||||||| | ||| || | |||| | | |||||| | | || || | || Sbjct 514 CAATTAGAATTTGATAAAAAATCTATTA-TAGCTATTGCACAAAAGGCAATGAATAAAAA 456 Query 189522 TACTGGTGCTCGCGGATTACAATCCATTATTGAAAATATTATGTTAGATGTAATGTATGA 189581 || || ||| | ||||||| || || ||||||||||| | | ||| | ||||| || Sbjct 455 AACAGGCGCTAGAGGATTACGCTCTATCATTGAAAATATGTTACTTGATATCATGTACGA 396 Query 189582 AGTTCCAGCT 189591 | | ||| || Sbjct 395 ACTGCCATCT 386 >seq189118 Length=1719 Score = 93.3 bits (102), Expect = 1e-13 Identities = 197/292 (67%), Gaps = 4/292 (1%) Strand=Plus/Minus Query 206930 TATTGTCTGATTACAATAAAGGTAATGTGAAAGCTCGTATGAGAATGATAGCTCAATATG 206989 |||| || ||||| | | ||| |||| ||| || | ||||||| || ||||| Sbjct 1275 TATT-TCAGATTATATAAGAGGCAATGAAAAATCTAGAGAAAGAATGAAAGTGCAATACA 1217 Query 206990 CTATTGGCGGAGCGAAAAATCTATTAGTAATTGGAACAGATCATGCTGCAGAAGCTATAA 207049 | ||| | || |||||| | ||| | ||||||| ||||| |||||| || | Sbjct 1216 GTGTTGCTGCAGTGAAAAAAGGTCTTGTAGTCGGAACAGGCCATGCAGCAGAAAACATTA 1157 Query 207050 CTGGTTTCTATACAAAATTTGGAGACAATGGAGTAGATATTTTACCTATAAGCGGTCTTA 207109 |||| || | |||||||| |||||| |||||| ||||||| ||||| | | Sbjct 1156 CTGGATTTTTTACAAAATATGGAGATAATGGAACAGATATTAATCCTATTTCTAAATTAA 1097 Query 207110 CGAAAAGACAAGGTAAAATGTTATTGGAAGAATTAAATGCTCCAGAGAGATTATATTTAA 207169 ||| ||||| | || | || || || | |||||| |||| || |||||||||| Sbjct 1096 ATAAACGACAAATTCAATTATTGTTAAAAAATTTAAATTGTCCAAAGCATTTATATTTAA 1037 Query 207170 AAGTACCAACAGCAGATCTTTTAGATGATAAACCATTACAAACAGATGAAGA 207221 || ||||| ||||| |||||| ||| ||| |||| |||||| || Sbjct 1036 AAAAACCAATGGCAGA---TTTAGAAGATGAACGTCCACAACAAGATGACGA 988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1574040952049280