Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_023856.1 Length=152460 Score E Sequences producing significant alignments: (Bits) Value seq30067 122 8e-23 seq159469 109 5e-19 >seq30067 Length=5021 Score = 122 bits (134), Expect = 8e-23 Identities = 268/399 (67%), Gaps = 2/399 (1%) Strand=Plus/Plus Query 31482 CCAACACCCATCATGTCCGGCGTTCGTACCCCAACCCGCCAATTCAGTTCTTGTGTTCTT 31541 |||||||| || ||||| || || | || || || || ||||| |||||||||||| | Sbjct 3320 CCAACACCAATTATGTCTGGAGTCAGAACTCCTACTCGTCAATTTAGTTCTTGTGTTTTA 3379 Query 31542 ATCAAAACCGGTGACACTTTGGACTCAATCAATGCTACAGCCAAAAGTATTGTTGATTAT 31601 || || | ||| | ||| | || || ||||| ||| | | ||||||| | ||| Sbjct 3380 ATTGAATGTGCTGATAATTTAAATTCCATTAATGCGACAACTAGCTCTATTGTTAAATAT 3439 Query 31602 GTATCCAAACGCGCTGGGATCGGATTTGATGTTGGAGCAATTCGTGGCATCGGTAGCCCT 31661 || ||| |||| ||||| || || || ||| ||| |||||| | | || || ||| Sbjct 3440 GTTTCCCAACGTGCTGGAATTGGTATTAATGCAGGACAAATTCGCGCATTAGGAAGTCCT 3499 Query 31662 ATCCGAAAAGGTGAAATGGTGCACACAGGCCTGGTTCCTTTCATAAAATATCTGACTGGG 31721 || |||| || ||| | || || || | ||||| ||| || | | Sbjct 3500 ATTAGAAACGGAGAAGCATTTCATACTGGTTGTATACCTTTTTATAAACATTTTCAAAGC 3559 Query 31722 GCATTAAAGTCTTGCTCTCAAGGCGGTATTCGTGGCGGATCAGCAACT-TGCTATATCCC 31780 || |||| ||||| |||||||| ||| || | || ||| | |||||| | | ||| || Sbjct 3560 GCTGTAAAATCTTGTTCTCAAGGAGGTGTTAGAGGTGGAGCTGCAACTATTTTTTAT-CC 3618 Query 31781 TATCTGGCATTATCAATTTGATGATGTTGTGGTCCTGAAGAACAACCGTGGTCTTGAAGA 31840 || ||||||| | || |||| || | | || | || |||||| | || ||||||| Sbjct 3619 AATATGGCATTTTGAAGTTGAAAATTTATTAGTTTTAAAAAACAACAGGGGAATTGAAGA 3678 Query 31841 GAACCGTGAACGCCGTATCGACTATGGTATTCAGATCAA 31879 || | | ||| | | ||||||||| ||||| || || Sbjct 3679 AAATAGAGTACGTCATGTCGACTATGCAATTCAAATTAA 3717 >seq159469 Length=1977 Score = 109 bits (120), Expect = 5e-19 Identities = 141/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 31482 CCAACACCCATCATGTCCGGCGTTCGTACCCCAACCCGCCAATTCAGTTCTTGTGTTCTT 31541 ||||||||||| ||||| || || || || || || || || || |||||||||||| | Sbjct 1689 CCAACACCCATTATGTCTGGAGTACGAACTCCTACTCGTCAGTTTAGTTCTTGTGTTTTA 1630 Query 31542 ATCAAAACCGGTGACACTTTGGACTCAATCAATGCTACAGCCAAAAGTATTGTTGATTAT 31601 ||| || | ||| | ||| |||| || |||||||| | | ||||||| | ||| Sbjct 1629 ATCGAATGTGCTGATAATTTAAACTCTATTAATGCTACTACTAGCTCTATTGTTAAATAT 1570 Query 31602 GTATCCAAACGCGCTGGGATCGGATTTGATGTTGGAGCAATTCGTGGCATCGGTAGCCCT 31661 ||||| |||| ||||| ||||| || ||| ||| |||||| | | || || ||| Sbjct 1569 GTATCACAACGTGCTGGAATCGGTATTAATGCGGGACAAATTCGCGCGTTAGGAAGTCCT 1510 Query 31662 ATCCGAAAAGGTGAA 31676 || |||| |||||| Sbjct 1509 ATTAGAAACGGTGAA 1495 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482402532552000