Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_024121.1 Length=167266 Score E Sequences producing significant alignments: (Bits) Value seq159469 149 7e-31 seq30067 149 7e-31 seq493767 107 2e-18 >seq159469 Length=1977 Score = 149 bits (164), Expect = 7e-31 Identities = 280/408 (69%), Gaps = 4/408 (1%) Strand=Plus/Plus Query 139719 TTGATTTGCACACCGTAATCCAAGTGACGAATGCGGTTCTCTTCAACGCCTTTGTTGTTT 139778 || ||||| | ||||||| | ||||| | | || ||||||| ||| | || ||| Sbjct 1292 TTAATTTGAAGTGCGTAATCAATATGACGCACTCTATTTTCTTCAATTCCTCTATTATTT 1351 Query 139779 TTCAGAACAAGCAAGTTTTCAACTTCCAAGTGCCAGATTGGATAGTACAACGTCGCTGCA 139838 || | ||| | || |||||||||| || ||||| |||||||| | | || || || Sbjct 1352 TTTAAAACTAATAAACTTTCAACTTCAAAATGCCATATTGGATAAAAAATAGTTGCAGCT 1411 Query 139839 CCACCACGAACACCACCTTGAGAACAGGATTTAACCGCAGTCTGGAAGTGTTTCCAGAAA 139898 || || | || || ||||| ||||||||||| || ||| | || |||||||| | ||| Sbjct 1412 CCTCCTCTCACTCCGCCTTGTGAACAGGATTTTACGGCACTTTGAAAGTGTTTATAAAAA 1471 Query 139899 GGAATTACGCCAGTGTGTTTGACTTCACCGAAACCAATTTTTGAGCCTTCAGCTCGGATT 139958 || || ||||| || |||||||| | ||| ||| || || ||| Sbjct 1472 GGTATACAACCAGTATGAAATGCTTCACCGTTTCTAATAGGACTTCCTAACGCGCGAATT 1531 Query 139959 CGACCTGCGTTGATGCCGATTCCAGCTCGTTTAGAAATGTACTTGACAATCGATGCTGCT 140018 | || || || || ||||||||||| |||| || | || || ||||| || ||| | Sbjct 1532 TGTCCCGCATTAATACCGATTCCAGCACGTTGTGATACATATTTAACAATAGA-GCTAGT 1590 Query 140019 GAGT--CGTTGATACTGTTAAGCGAATCATCAGACTCGATAACAACACACGAACTGAATT 140076 ||| | || ||| ||| | |||| || | ||||| | |||||| ||||| || | Sbjct 1591 -AGTAGCATTAATAGAGTTTAAATTATCAGCACATTCGATTAAAACACAAGAACTAAACT 1649 Query 140077 GACGAATCGGTGTACGGGCTCCTGCCATAATAGGAGTTGGCAATGAAA 140124 ||||| | || || || |||| | |||||| || ||||| ||||||| Sbjct 1650 GACGAGTAGGAGTTCGTACTCCAGACATAATGGGTGTTGGTAATGAAA 1697 >seq30067 Length=5021 Score = 149 bits (164), Expect = 7e-31 Identities = 257/371 (69%), Gaps = 2/371 (1%) Strand=Plus/Minus Query 139755 TTCTCTTCAACGCCTTTGTTGTTTTTCAGAACAAGCAAGTTTTCAACTTCCAAGTGCCAG 139814 || ||||||| || |||||||||| | ||| | || ||||||||||| || ||||| Sbjct 3681 TTTTCTTCAATTCCCCTGTTGTTTTTTAAAACTAATAAATTTTCAACTTCAAAATGCCAT 3622 Query 139815 ATTGGATAGTACAACGTCGCTGCACCACCACGAACACCACCTTGAGAACAGGATTTAACC 139874 |||||||| | | || || || ||||| | |||||| ||||||||||| ||||| || Sbjct 3621 ATTGGATAAAAAATAGTTGCAGCTCCACCTCTAACACCTCCTTGAGAACAAGATTTTACA 3562 Query 139875 GCAGTCTGGAAGTGTTTCCAGAAAGGAATTACGCCAGTGTGTTTGACTTCACCGAAACCA 139934 || | || || ||||| | ||||| || ||||| || |||| ||| | | Sbjct 3561 GCGCTTTGAAAATGTTTATAAAAAGGTATACAACCAGTATGAAATGCTTCTCCGTTTCTA 3502 Query 139935 ATTTTTGAGCCTTCAGCTCGGATTCGACCTGCGTTGATGCCGATTCCAGCTCGTTTAGAA 139994 || ||| || || ||| | ||||| || || || |||||||| |||| ||| Sbjct 3501 ATAGGACTTCCTAATGCGCGAATTTGTCCTGCATTAATACCAATTCCAGCACGTTGGGAA 3442 Query 139995 ATGTACTTGACAATCGATGCT-GCTGAGTCGTTGATACTGTTAAGCGAATCATCAGACTC 140053 | || || ||||| || ||| | || | || || || | |||| || | || Sbjct 3441 ACATATTTAACAATAGA-GCTAGTTGTCGCATTAATGGAATTTAAATTATCAGCACATTC 3383 Query 140054 GATAACAACACACGAACTGAATTGACGAATCGGTGTACGGGCTCCTGCCATAATAGGAGT 140113 || | |||||| ||||| ||||||||| | || || | | |||| | |||||| || || Sbjct 3382 AATTAAAACACAAGAACTAAATTGACGAGTAGGAGTTCTGACTCCAGACATAATTGGTGT 3323 Query 140114 TGGCAATGAAA 140124 ||| ||||||| Sbjct 3322 TGGTAATGAAA 3312 >seq493767 Length=615 Score = 107 bits (118), Expect = 2e-18 Identities = 205/302 (68%), Gaps = 0/302 (0%) Strand=Plus/Minus Query 138063 ATGATGTGGGTGTAAGAACGAGAGTGAATGGTCTCAGAGAATGTCCAAGTCTGAATCCAT 138122 || || || || |||||||| || ||||| || || || || | ||| || | ||||||| Sbjct 404 ATTATATGAGTATAAGAACGTGAATGAATAGTTTCTGAAAAAGACCATGTTTCAATCCAT 345 Query 138123 GTTTCAAGTCCAACATCAGAACAGATATCAGCGAATGCGATAGCAGGTGCTCGTCCTTGA 138182 ||||| ||| | | |||| ||| || || ||| ||| || ||||||| Sbjct 344 GTTTCCAGTTCTGGAATAGAAATAATAGGTAAAAAAGCTATATTAGGACTTCTTCCTTGA 285 Query 138183 ACTGAATCAAGGAGTGTTTGATATTTCAAGTTGTTGGTGAAAATGCCTTGATCGTTTTCA 138242 | ||||||||| | |||||||||||| || || | | |||||| || || | || Sbjct 284 ATTGAATCAAGTAATGTTTGATATTTTAAATTACTAATAAAAATGTGTTTTTCATGATCC 225 Query 138243 GACATTTTCTGGAATTGAACACGATCTTTGGATACGTCTACTTCTTCTGGACGCCAAAAG 138302 | | || || || | | |||||| | || | |||| ||| || || | |||||| Sbjct 224 GGTAGATTTTGAAAATCTATTCGATCTCTAGAAAGATCTATTTCCTCAGGTCTCCAAAAA 165 Query 138303 AAGGAGAGTTGCTTTTCAGTCAACTTTTCAAATTTTTCGTGTTTTGGATCATCGTATCGA 138362 || || | ||| |||||| | | | ||||||| | | | |||| | | ||| |||||| Sbjct 164 AATGATAATTGTTTTTCAATTAGTTGTTCAAATATATTATATTTTTGCTGATCATATCGA 105 Query 138363 GC 138364 || Sbjct 104 GC 103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 529262865165600