Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_024124.2 Length=169148 Score E Sequences producing significant alignments: (Bits) Value seq30067 179 4e-40 seq118173 93.3 5e-14 >seq30067 Length=5021 Score = 179 bits (198), Expect = 4e-40 Identities = 311/449 (69%), Gaps = 6/449 (1%) Strand=Plus/Plus Query 27204 ATATTATTCGTTTTTATGATGCCGTTTCTACTCATCAAGTTTCATTGCCTACTCCAATTA 27263 ||||| ||||||||| |||| |||||||| | || ||||||| || || ||||||| Sbjct 3273 ATATTCATCGTTTTTACAATGCTATTTCTACTTTTAAAATTTCATTACCAACACCAATTA 3332 Query 27264 TGGCAGGTGCTCGTACTCCAACTCGCCAGTTCTCTAGTTGTGTAGTTATTGAAGCCGGTG 27323 || | || | | ||||| ||||| || || | |||||| | |||||| | || Sbjct 3333 TGTCTGGAGTCAGAACTCCTACTCGTCAATTTAGTTCTTGTGTTTTAATTGAATGTGCTG 3392 Query 27324 ATTCGTTAAAATCTATTAAC---AAAACTTCAGCATCAATTATTGAATATATTTCTAAAC 27380 || ||||| || ||||| | |||| ||| || ||| || ||||| |||| ||| Sbjct 3393 ATAATTTAAATTCCATTAATGCGACAACT--AGC-TCTATTGTTAAATATGTTTCCCAAC 3449 Query 27381 GAGCTGGTATAGGTATCAACGTTGGTATGCTTCGTGCAGAAGGTTCTAAGATCGGTATGG 27440 | ||||| || ||||| || | || |||| ||| ||| | || | | | Sbjct 3450 GTGCTGGAATTGGTATTAATGCAGGACAAATTCGCGCATTAGGAAGTCCTATTAGAAACG 3509 Query 27441 GTGAAGTTCGACATACGGGTGTTATTCCATTCTGGAAACATTTCCAAACTGCAGTAAAAT 27500 | |||| ||||| ||| ||| || || | |||||||| |||| || ||||||| Sbjct 3510 GAGAAGCATTTCATACTGGTTGTATACCTTTTTATAAACATTTTCAAAGCGCTGTAAAAT 3569 Query 27501 CTTGTTCTCAAGGTGGTATTCGTGGTGGTGCTGCTACAGCGTATTATCCGATGTGGCACT 27560 ||||||||||||| ||| || | ||||| ||||| || | |||||| || ||||| | Sbjct 3570 CTTGTTCTCAAGGAGGTGTTAGAGGTGGAGCTGCAACTATTTTTTATCCAATATGGCATT 3629 Query 27561 TAGAAGTAGAGAACCTATTAGTTCTGAAAAATAATAAAGGTGTGGATGAAAACCGTATTC 27620 | ||||| || || |||||||| | ||||| || | || | || ||||| | | | Sbjct 3630 TTGAAGTTGAAAATTTATTAGTTTTAAAAAACAACAGGGGAATTGAAGAAAATAGAGTAC 3689 Query 27621 GACATATGGACTACGGAATTCAGATTAAT 27649 | ||| | ||||| | |||||| |||||| Sbjct 3690 GTCATGTCGACTATGCAATTCAAATTAAT 3718 >seq118173 Length=2464 Score = 93.3 bits (102), Expect = 5e-14 Identities = 237/354 (67%), Gaps = 10/354 (3%) Strand=Plus/Minus Query 29027 TATTGCGCGTTATGATATTCAACGCCATAAAGTTTTTGAAGATTTGACCGAAAAACAATT 29086 |||||| | |||||| ||| |||| |||||||| | || | ||||||||||| Sbjct 2347 TATTGCTAGGTATGATCAACAAAAATATAATATTTTTGAACAATTAATTGAAAAACAATT 2288 Query 29087 GTCATTTTTCTGGCGCCCCGAAGAGGTAAA---CT-TGATGTTGGACTCTGCGCAGTTCA 29142 |||||||| ||| | || ||||| || | || | || | || | | |||| Sbjct 2287 ATCATTTTTTTGGAGACCTGAAGAAATAGATCTCTCTCGTGATAGAATA---GATTTTCA 2231 Query 29143 ATAAGCTTCCTCAGTTCCAACAGGACATCTTTACAACCAACCTTAAGTATCAATCATTAT 29202 | || | ||| | || | | || |||| | || | || |||||| ||||| Sbjct 2230 A-AACTTACCTAATAATGAAAAACATATTTTTATTAGTAATTTAAAATATCAAACATTAC 2172 Query 29203 TAGATTCTATCCAAGGCAGAGCCCCATCTGCGGTACTTATGGCACTGATTTCTGACCCTT 29262 | |||||||| ||||| ||| ||| | | || | || | |||||| ||| Sbjct 2171 TTGATTCTATTCAAGGAAGAAGCCCTAATATAGCTTTTTTACCAATCATTTCTATTCCTG 2112 Query 29263 CATTAGATACATGGGTTGCAACATGGACATTCAGTGAAACTATTCACTCTCGTTCATATA 29322 | |||| |||||||||| ||||||| | || |||||||| || |||||||| |||| Sbjct 2111 AACTAGAGACATGGGTTGAAACATGGTCTTTTTCAGAAACTATACATTCTCGTTCTTATA 2052 Query 29323 CTCATATCATGCGAAATCTTTATACAGAC-CCATCTAAGGTATTTGATGAGATT 29375 ||||||| || |||| | || | | | |||||| ||||||||||| ||| Sbjct 2051 CTCATATAATTAGAAA-CATTGTCAACTCTCCATCTGTAGTATTTGATGATATT 1999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 535219311604800