Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_024369.2 Length=41569 Score E Sequences producing significant alignments: (Bits) Value seq227744 150 5e-32 seq342690 129 2e-25 >seq227744 Length=1455 Score = 150 bits (166), Expect = 5e-32 Identities = 211/296 (71%), Gaps = 0/296 (0%) Strand=Plus/Plus Query 38194 ATGGCAAGCAGAGGTGTAAACAAGGTGATCTTAATTGGTCACCTTGGTCAAGATCCAGAG 38253 ||||| || ||||||||||| || || || | ||||| || | || |||||||| || Sbjct 108 ATGGCCAGTAGAGGTGTAAATAAAGTTATTCTTATTGGGCATTTAGGGCAAGATCCTGAA 167 Query 38254 GTGCGCTATCTACCAAGCGGCGGCGCAGTGGCAAACATCACAATAGCAACGTCTGAGGTT 38313 || || ||| | |||| || ||||| | ||| || ||| |||| || || || | Sbjct 168 GTTCGTTATATGCCAAATGGTAATGCAGTAGTAAATATGACATTAGCTACTTCAGAAAAT 227 Query 38314 TGGCGGGATAAGCAAACCGGACAGCCAAAAGAGAAAACAGAGTGGCACCGAGTTACTTTG 38373 ||| ||||| | || || | ||||| |||||||| ||||| ||| | ||| Sbjct 228 TGGAAAGATAAAAACACTGGGGAAAATAAAGAAAAAACAGAATGGCATCGAATAGTTTTA 287 Query 38374 TTTGGGAAGCTGGCTGAAGTTGCTGGCGAATACCTTCGAAAAGGATCTCATGTTTATATT 38433 ||||| || | || ||| ||||||||||||| ||||||||||| ||||| || |||||| Sbjct 288 TTTGGAAAATTAGCAGAAATTGCTGGCGAATATCTTCGAAAAGGTTCTCAAGTATATATT 347 Query 38434 GAAGGCCAGCTTGAAACTAAGAAGTGGCGGGATCAAAGCGGTCAGGACCGATACAC 38489 ||||| | | |||||| || |||| ||||||| || | || || ||||| Sbjct 348 GAAGGATCGTTACAAACTAGAAAATGGCAAGATCAAAATGGACTTGAACGTTACAC 403 >seq342690 Length=956 Score = 129 bits (142), Expect = 2e-25 Identities = 215/311 (69%), Gaps = 0/311 (0%) Strand=Plus/Minus Query 38194 ATGGCAAGCAGAGGTGTAAACAAGGTGATCTTAATTGGTCACCTTGGTCAAGATCCAGAG 38253 |||||||| ||||| || || || || || | ||||| || | || ||||||||||| Sbjct 926 ATGGCAAGTAGAGGCGTTAATAAAGTTATTCTTATTGGACATTTAGGACAAGATCCAGAA 867 Query 38254 GTGCGCTATCTACCAAGCGGCGGCGCAGTGGCAAACATCACAATAGCAACGTCTGAGGTT 38313 || || ||| | || | || ||||| | ||| || || ||||||| || || | Sbjct 866 GTACGTTATATGCCCAATGGTAATGCAGTAGTAAATATGACTTTAGCAACTTCAGAAAAT 807 Query 38314 TGGCGGGATAAGCAAACCGGACAGCCAAAAGAGAAAACAGAGTGGCACCGAGTTACTTTG 38373 ||| ||||| | || ||| | ||||| |||||||| ||||| || | || Sbjct 806 TGGAAAGATAAAAATACTGGAGAAAATAAAGAAAAAACAGAATGGCATAGAATAGTATTA 747 Query 38374 TTTGGGAAGCTGGCTGAAGTTGCTGGCGAATACCTTCGAAAAGGATCTCATGTTTATATT 38433 ||||| || | || ||| |||| || ||||| ||||||||||| ||||| || |||||| Sbjct 746 TTTGGAAAATTAGCAGAAATTGCCGGTGAATATCTTCGAAAAGGTTCTCAAGTATATATT 687 Query 38434 GAAGGCCAGCTTGAAACTAAGAAGTGGCGGGATCAAAGCGGTCAGGACCGATACACAATA 38493 ||||| || |||||| || |||| || |||| ||| || || || || | | Sbjct 686 GAAGGATCACTACAAACTAGAAAATGGCAAGACCAAAATGGTTTAGAACGTTATACTACA 627 Query 38494 GGCATTGTGGT 38504 | ||||| || Sbjct 626 GAAATTGTTGT 616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 131516542472420