Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_024450.1 Length=204054 Score E Sequences producing significant alignments: (Bits) Value seq566467 96.9 4e-15 seq445472 93.3 5e-14 seq649280 87.8 2e-12 >seq566467 Length=515 Score = 96.9 bits (106), Expect = 4e-15 Identities = 67/75 (89%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 11728 AGTCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 11786 |||||||| ||||||||||||| |||| |||| ||||| | ||||||||||||||||||| Sbjct 286 AGTCCTCGGTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGAT 227 Query 11787 TCCCCGACGAGGAGG 11801 |||||| || ||||| Sbjct 226 TCCCCGCCGGGGAGG 212 Score = 95.1 bits (104), Expect = 2e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 8655 TATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 8714 || |||||| |||||||||||| ||||| |||| ||||| | |||||||||||||||||| Sbjct 287 TAGTCCTCGGTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGA 228 Query 8715 TTCCCCGACGAGGAG 8729 ||||||| || |||| Sbjct 227 TTCCCCGCCGGGGAG 213 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| || |||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 213 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 272 Query 139413 TACTAACGAGGA 139424 ||||| |||||| Sbjct 273 TACTACCGAGGA 284 >seq445472 Length=701 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/73 (89%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 362 TCCTCGGTAGTATAGTGGTGAGTAT-CCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 420 Query 8718 CCCGACGAGGAGC 8730 |||| || ||||| Sbjct 421 CCCGCCGGGGAGC 433 Score = 87.8 bits (96), Expect = 2e-12 Identities = 64/72 (89%), Gaps = 2/72 (3%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||| |||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 362 TCCTCGGTAGTATAGTGGTGAGTAT-CCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 420 Query 11789 CCCGACGAGGAG 11800 |||| || |||| Sbjct 421 CCCGCCGGGGAG 432 >seq649280 Length=433 Score = 87.8 bits (96), Expect = 2e-12 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 8659 CCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTCC 8718 || || |||||||||||| ||||| |||| ||||| | |||||||||||||||||||||| Sbjct 71 CCGCGGTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCC 12 Query 8719 CCGACGAGGAG 8729 ||| || |||| Sbjct 11 CCGCCGGGGAG 1 Score = 84.2 bits (92), Expect = 3e-11 Identities = 62/71 (87%), Gaps = 1/71 (1%) Strand=Plus/Minus Query 11731 CCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTCC 11789 || || ||||||||||||| |||| |||| ||||| | |||||||||||||||||||||| Sbjct 71 CCGCGGTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCC 12 Query 11790 CCGACGAGGAG 11800 ||| || |||| Sbjct 11 CCGCCGGGGAG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 645695251778400