Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_024451.1 Length=220222 Score E Sequences producing significant alignments: (Bits) Value seq463085 86.0 9e-12 >seq463085 Length=667 Score = 86.0 bits (94), Expect = 9e-12 Identities = 151/219 (69%), Gaps = 7/219 (3%) Strand=Plus/Minus Query 218491 TTTTCTTAAAGCACTTGGTTACACGAAACATTATGAAGATTGTATTTTAATTCATTACAC 218550 |||| | |||| | |||||||| || ||||| || |||||||| | || |||| || Sbjct 441 TTTTTTAAAAGGGTTGGGTTACACAAAGCATTACGACGATTGTATACTTATACATTCCAA 382 Query 218551 ATTGACTGGCAAAGTCCCTGATAACATTGAACATCTTGAAGAAAAATTAATGTCTGATTT 218610 |||||||| || || | ||||| |||||||||||| | ||||| || ||||| Sbjct 381 TTTGACTGGTAATAAACCAAACGACATTTCTCATCTTGAAGAAGATTTAATTTCAGATTT 322 Query 218611 TGATCAATTAACAGAACAGTACGATTTATTATTTAAAGATATTGAAAGAAAAAACTTTAT 218670 | || | ||||| ||| || || | ||| || | ||| | ||||| || || Sbjct 321 TTCCAAAATCTCAGAAACGTATACATTGTTGTATAACAATTTAGAACGGAAAAATTTCAT 262 Query 218671 AAACACACAGTA-----TGTACTTTTTCAGTTGTTACAA 218704 ||||| ||| || ||||||| || ||||||| || Sbjct 261 AAACATACAATACATTTTGTACTTGTT--GTTGTTAAAA 225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 696866253919200