Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq48246 104 5e-17 seq23164 95.1 3e-14 seq4427 91.5 3e-13 >seq48246 Length=4099 Score = 104 bits (114), Expect = 5e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 131867 GCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTTTTGGCTT 131926 ||||| ||||| |||||||| || |||||||| || ||||| || || |||||| | Sbjct 1719 GCTTTCGCTTGCGTTGAAGGGATTTTCTTTTCCGGAAGCTTCTGCGCGATTTTTTGGTTG 1660 Query 131927 AAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGAGATGAA 131986 ||||| ||||| |||||||||||| | | || || || |||| |||||| ||||||| Sbjct 1659 AAGAAACGTGGGTTGATGCCTGGATTAACCTTCTCGAACGAATTAATCTCGCGAGATGAG 1600 Query 131987 GCATTGCATACTGAATTTGC 132006 | ||| || ||| ||||| Sbjct 1599 GGATTACACTGTGATTTTGC 1580 >seq23164 Length=5532 Score = 95.1 bits (104), Expect = 3e-14 Identities = 156/219 (71%), Gaps = 6/219 (3%) Strand=Plus/Plus Query 110285 TCGTGACTATGATATTGACTATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCG 110344 |||||||| ||| ||| |||||||||||||||||||||||| | ||||| | ||| Sbjct 1316 TCGTGACTTTGACTATGATTATTTTGGTTTCAAAACTCTTGAAAGATCTTATCT-CTTGA 1374 Query 110345 TG-TCAATGGCGAGATCATTGAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTA 110403 | || |||| | | ||||| | |||||||| ||||| | | ||||| |||| | Sbjct 1375 AGATCCATGGAAGGGTTGTTGAAAGACCTCAACATATGTTAATGAGGGTTGCTGTTGGAA 1434 Query 110404 TTCATGGACATGATATTAAAGCTGTTATTGAATGTTATGATGTATTAAGT-AAAAAGAAA 110462 ||||| |||||||| || ||||||| | ||| || || | || | ||||| Sbjct 1435 TTCATAAGAATGATATTGAATCTGTTATCAAGACATATCATTTA--ATGTCACAAAGATG 1492 Query 110463 GCT-ATTCATGCTACTCCTACCCTATTTAACGCAGGAAC 110500 | | | ||||| |||| ||||| || || |||||||| Sbjct 1493 GTTCACACATGCATCTCCCACCCTTTTCAATGCAGGAAC 1531 >seq4427 Length=8973 Score = 91.5 bits (100), Expect = 3e-13 Identities = 130/183 (71%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 305306 AGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATG 305365 || || |||||||| |||| || || |||||| | ||||| |||||||| ||| Sbjct 4276 AGGCACTTGAATGATGGAGATTTTGTGCTTTTCAATCGACAACCGAGTCTGCATAAGATG 4335 Query 305366 TCTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGT 305425 ||||| |||| |||| |||| | | | | || || || |||||| || | Sbjct 4336 TCTATAATGGGGCATAGGATCAAGATCATGCCATACTCCACCTTCCGGTTAAATCTATCT 4395 Query 305426 GCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAA 305485 | | | || || ||||| ||||||||||||||||||||||| |||||||| ||||| Sbjct 4396 GTCACTTCACCATACAATGCTGATTTTGATGGAGATGAAATGAACATGCATGTGCCTCAG 4455 Query 305486 TCA 305488 ||| Sbjct 4456 TCA 4458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1173490637171710