Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_024794.1 Length=167318 Score E Sequences producing significant alignments: (Bits) Value seq30067 176 5e-39 seq118173 102 9e-17 >seq30067 Length=5021 Score = 176 bits (194), Expect = 5e-39 Identities = 310/449 (69%), Gaps = 6/449 (1%) Strand=Plus/Minus Query 141890 ATTAATCTGAATTCCGTAGTCCATATGTCGAATACGGTTTTCATCCACACCTTTGTTATT 141949 |||||| |||||| | ||||| | ||| || | | ||||| || | || |||| || Sbjct 3718 ATTAATTTGAATTGCATAGTCGACATGACGTACTCTATTTTCTTCAATTCCCCTGTTGTT 3659 Query 141950 TTTCAGAACTAATAGGTTCTCTACTTCTAAGTGCCACATCGGATAATACGCTGTAGCAGC 142009 ||| | |||||||| || || ||||| || ||||| || |||||| | || ||||| Sbjct 3658 TTTTAAAACTAATAAATTTTCAACTTCAAAATGCCATATTGGATAAAAAATAGTTGCAGC 3599 Query 142010 ACCGCCGCGAATACCACCTTGAGAACAAGATTTTACTGCAGTTTGGAAATGTTTCCAGAA 142069 || || | || ||| |||||||||||||||||||| || |||| |||||||| | || Sbjct 3598 TCCACCTCTAACACCTCCTTGAGAACAAGATTTTACAGCGCTTTGAAAATGTTTATAAAA 3539 Query 142070 TGGAATAACACCTGTATGTCGAACTTCACCCATACCGATCTTAGAACCTTCTGCACGAAG 142129 || ||| ||| ||||| |||| || | | || | ||| ||| |||| Sbjct 3538 AGGTATACAACCAGTATGAAATGCTTCTCCGTTTCTAATAGGACTTCCTAATGCGCGAAT 3479 Query 142130 CATGCCAACGTTGATACCGATACCAGCTCGTTTAGAAATATATTCGATAATTGATGCTGA 142189 || | || ||||| || ||||| |||| |||| ||||| | ||| || ||| Sbjct 3478 TTGTCCTGCATTAATACCAATTCCAGCACGTTGGGAAACATATTTAACAATAGA-GCT-- 3422 Query 142190 AGTTTT---GTTAATAGATTTTAACGAATCACCGGCTTCAATAACTACACAACTAGAGAA 142246 |||| | ||||| || ||||| |||| | |||||| | |||||| | || Sbjct 3421 AGTTGTCGCATTAATGGAATTTAAATTATCAGCACATTCAATTAAAACACAAGAACTAAA 3362 Query 142247 CTGGCGAGTCGGAGTACGAGCACCTGCCATAATTGGAGTAGGCAATGAAACTTGATGAGT 142306 || ||||| ||||| | | || | ||||||||| || || ||||||| || | ||| Sbjct 3361 TTGACGAGTAGGAGTTCTGACTCCAGACATAATTGGTGTTGGTAATGAAATTTTAAAAGT 3302 Query 142307 AGAAACGGCATCATAAAAACGAATAATAT 142335 ||||| |||| ||||||||| ||||| Sbjct 3301 AGAAATAGCATTGTAAAAACGATGAATAT 3273 >seq118173 Length=2464 Score = 102 bits (112), Expect = 9e-17 Identities = 258/386 (67%), Gaps = 10/386 (3%) Strand=Plus/Plus Query 140162 AATCTCATCAAATACCTTCGATGGATCAGTATA-AAGATTTCGCATAATATGAGTATATG 140220 ||| ||||||||||| |||||| ||| | || |||| || ||||||||||| | Sbjct 1999 AATATCATCAAATACTACAGATGGA-GAGTTGACAATGTTTCTAATTATATGAGTATAAG 2057 Query 140221 AACGAGAGTGAATAGTTTCACTGAATGTCCATGTAGCAACCCATGTATCTAATGAAGGGT 140280 ||||||| || |||||||| || | |||||| |||||||||| |||| | ||| Sbjct 2058 AACGAGAATGTATAGTTTCTGAAAAAGACCATGTTTCAACCCATGTCTCTAGTTCAGGAA 2117 Query 140281 CAGAAATCAGTGCCATAAGTACCGCAGATGGGGCCCTGCCTTGGATAGAATCTAATAATG 140340 |||||| | || | || | | ||| || ||||| |||||||| | ||||| Sbjct 2118 TAGAAATGATTGGTAAAAAAGCTATATTAGGGCTTCTTCCTTGAATAGAATCAAGTAATG 2177 Query 140341 ATTGATACTTAAGGTTGTTTGTAAAGATGTCCTGTTGGAACTGAGGAAGCTTATTGAACT 140400 |||||| || | || | |||| || | | || | ||| | || ||||| Sbjct 2178 TTTGATATTTTAAATTACTAATAAAAATATGTTTTTCATTATTAGGTAAGTT-TTGAAAA 2236 Query 140401 GCGCAGAGTCCAACATCA-AG---TTTACCTCTTCAGGGCGCCAGAAAAATGACAATTGC 140456 | | || | || | || | || |||||||| | ||| |||||||| ||||| Sbjct 2237 TC---TATTCTATCACGAGAGAGATCTATTTCTTCAGGTCTCCAAAAAAATGATAATTGT 2293 Query 140457 TTTTCGGTCAAATCTTCAAAAACTTTATGGCGTTGAATATCATAACGCGCAATACCAAGA 140516 ||||| | || | |||||||| |||| ||| |||||| | |||||| | | Sbjct 2294 TTTTCAATTAATTGTTCAAAAATATTATATTTTTGTTGATCATACCTAGCAATATTTACA 2353 Query 140517 CCTGAACCAAAAAACATAGGTTCTTT 140542 | |||||||||||||||||||| Sbjct 2354 GGTTGCCCAAAAAACATAGGTTCTTT 2379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 529427442856800