Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_025422.1 Length=155997 Score E Sequences producing significant alignments: (Bits) Value seq118173 125 7e-24 seq30067 93.3 4e-14 >seq118173 Length=2464 Score = 125 bits (138), Expect = 7e-24 Identities = 316/474 (67%), Gaps = 5/474 (1%) Strand=Plus/Plus Query 20220 ATGAGTTCATCATATTCTTTTGTAATATCTTTGGCACAATCAACAATCTCTTGAATTTCA 20279 || ||||||||||| | | | ||||| ||| |||| |||| ||| | || | || | Sbjct 1937 ATCAGTTCATCATAATAGATAGAAATATTTTTAGCACGATCATTAATATGTTTATTTGAA 1996 Query 20280 GTAATTGTATCAAACACTACTGAAGGATCG-GGATAGATGTTGCGAATGATATGAGTATA 20338 |||| |||||| ||||| || ||| | || | ||||| | ||| ||||||||||| Sbjct 1997 ATAATATCATCAAATACTACAGATGGAGAGTTGACA-ATGTTTCTAATTATATGAGTATA 2055 Query 20339 AGAGCGTGAGTGAATCGTCTCAAAAAACTCCCATGTCTTGAGCCATACTTCAATTTCAGG 20398 ||| || || || || || || |||| |||||| | | |||| || | |||||| Sbjct 2056 AGAACGAGAATGTATAGTTTCTGAAAAAGACCATGTTTCAACCCATGTCTCTAGTTCAGG 2115 Query 20399 AAGAGAACAAATAGAAGCAAAAGCTTCAGAGGGGCCTCGGCCTTGCACAGAGTCAAGAAC 20458 || |||| || | ||||||| | |||| || ||||| | ||| ||||| | Sbjct 2116 AATAGAAATGATTGGTAAAAAAGCTATATTAGGGCTTCTTCCTTGAATAGAATCAAGTAA 2175 Query 20459 GATATTACGAGCTAGAGGAAGTGTAAAAATTTGTTGCT-GTTCATATGGAAGTTTCTTGA 20517 | | | || | | ||||||| |||| | || || | |||||| | | Sbjct 2176 TGTTTGATATTTTAAATTACTAATAAAAATATGTTTTTCATTATTAGGTAAGTTT-TGAA 2234 Query 20518 AATCTTTTGAATCTTTCGAGAGTTCTACTTCTTGAGGTCTCCAAAAGAAACCAAGTGCTT 20577 ||||| || ||| ||||| |||| ||||| |||||||||||| || | | || Sbjct 2235 AATCTATTCTATCACGAGAGAGATCTATTTCTTCAGGTCTCCAAAAAAATGATAATTGTT 2294 Query 20578 TGTCTGTTAATTTCTCGAACTGATTATATTTGACAGTATCATAACGAGCAATGTTCACCG 20637 | || |||||| || || ||||||||| |||||| | |||||| || || | Sbjct 2295 TTTCAATTAATTGTTCAAAAATATTATATTTTTGTTGATCATACCTAGCAATATTTACAG 2354 Query 20638 GTTCTCCCAGGAACATTGGCTGTTTAAGATGATCTACTTTGGTTGTGTTAAAAA 20691 ||| || | ||||| || | |||||| |||| || ||| || | | ||||| Sbjct 2355 GTTGCCCAAAAAACATAGGTTCTTTAAGTTGAT-TATTTTTTTTTTTTGAAAAA 2407 >seq30067 Length=5021 Score = 93.3 bits (102), Expect = 4e-14 Identities = 205/303 (68%), Gaps = 11/303 (4%) Strand=Plus/Minus Query 22653 TTCTTTACATGACTGTAAAGATCGAGAGGTTCAGGTTGACCATAAACCTCTTTACGTAGA 22712 || ||||||||| || || | | |||||| ||||||||| ||| ||| | ||| Sbjct 3021 TTTTTTACATGATCATATAGTTGAGGTGGTTCAAATTGACCATATGCCTTTTTTCTTAGG 2962 Query 22713 TCATAAGAGATC---AGTCGACCAGCAACATATTGATAGTCAGGAGCATCTTCTGAAATG 22769 | | || ||| | || | || | |||||||||||| || | |||| |||||| Sbjct 2961 TGAAAA---ATCGCTAATCTTGCCGCCATATATTGATAGTCTGGTGTGTCTTGTGAAATA 2905 Query 22770 AGTTCAGCAGCACTCCTGACTAAT-GTTTTTTGAATGTCAGAACTCTTGATTTTATCGTA 22828 || || || ||| | | | |||| |||| ||||| | | | | || |||| ||| Sbjct 2904 AGATCCGCGGCAG-CTTTAATAATCGTTTCATGAATATTTATAGTAGTAATATTATTGTA 2846 Query 22829 GAATTTCAGACGAGCATTCAGTTCAAGCTCTGATTCTGATA---CATCTAATCCTTCACA 22885 |||| | |||| | | ||||| | |||| | |||| |||||| |||||| | Sbjct 2845 AAATTGAATTCGAGAACATAATTCAACTTGTGATACAGATATGTCATCTAGTCCTTCTGA 2786 Query 22886 CGCCCAATGAACAACTTTGTGAATCTTATCAAAATCGAGAGGTTCTTTTCTACCATCACG 22945 ||||||| | || || ||||| ||||| |||| | ||||||||| |||||||| Sbjct 2785 TGCCCAATTTAACACCTTATGAATTTTATCTAAATTTATTTTTTCTTTTCTTCCATCACG 2726 Query 22946 CTT 22948 ||| Sbjct 2725 CTT 2723 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 493596980509200