Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_025437.1 Length=169062 Score E Sequences producing significant alignments: (Bits) Value seq30067 179 4e-40 seq118173 91.5 2e-13 >seq30067 Length=5021 Score = 179 bits (198), Expect = 4e-40 Identities = 311/449 (69%), Gaps = 6/449 (1%) Strand=Plus/Minus Query 142369 ATTAATCTGAATTCCGTAGTCCATATGTCTAATACGGTTTTCATCCACGCCTTTGTTATT 142428 |||||| |||||| | ||||| | ||| | | | ||||| || | || |||| || Sbjct 3718 ATTAATTTGAATTGCATAGTCGACATGACGTACTCTATTTTCTTCAATTCCCCTGTTGTT 3659 Query 142429 TTTCAGAACCAACAGGTTCTCTACTTCTAAGTGCCACATCGGATAATACGCTGTAGCAGC 142488 ||| | ||| || | || || ||||| || ||||| || |||||| | || ||||| Sbjct 3658 TTTTAAAACTAATAAATTTTCAACTTCAAAATGCCATATTGGATAAAAAATAGTTGCAGC 3599 Query 142489 ACCACCACGAATACCACCTTGAGAACAAGATTTTACTGCAGTTTGGAAATGTTTCCAGAA 142548 ||||| | || ||| |||||||||||||||||||| || |||| |||||||| | || Sbjct 3598 TCCACCTCTAACACCTCCTTGAGAACAAGATTTTACAGCGCTTTGAAAATGTTTATAAAA 3539 Query 142549 TGGAATAACACCCGTATGTCGAACTTCACCCATACCAATCTTAGAACCTTCTGCACGAAG 142608 || ||| ||| ||||| |||| || | | ||| | ||| ||| |||| Sbjct 3538 AGGTATACAACCAGTATGAAATGCTTCTCCGTTTCTAATAGGACTTCCTAATGCGCGAAT 3479 Query 142609 CATACCAACGTTGATACCGATACCAGCTCGTTTAGAAATATATTCAATAATTGATGCTGA 142668 || | || ||||| || ||||| |||| |||| ||||| || ||| || ||| Sbjct 3478 TTGTCCTGCATTAATACCAATTCCAGCACGTTGGGAAACATATTTAACAATAGA-GCT-- 3422 Query 142669 AGTTTT---GTTAATAGATTTTAACGAATCACCGGCTTCAATAACTACACAACTAGAGAA 142725 |||| | ||||| || ||||| |||| | |||||| | |||||| | || Sbjct 3421 AGTTGTCGCATTAATGGAATTTAAATTATCAGCACATTCAATTAAAACACAAGAACTAAA 3362 Query 142726 CTGGCGAGTTGGAGTACGAGCACCTGCCATAATTGGGGTTGGCAATGAAACTTGATGAGT 142785 || ||||| ||||| | | || | ||||||||| ||||| ||||||| || | ||| Sbjct 3361 TTGACGAGTAGGAGTTCTGACTCCAGACATAATTGGTGTTGGTAATGAAATTTTAAAAGT 3302 Query 142786 AGAAACGGCATCATAAAAACGAATAATAT 142814 ||||| |||| ||||||||| ||||| Sbjct 3301 AGAAATAGCATTGTAAAAACGATGAATAT 3273 >seq118173 Length=2464 Score = 91.5 bits (100), Expect = 2e-13 Identities = 221/328 (67%), Gaps = 10/328 (3%) Strand=Plus/Plus Query 140645 AATCTCATCAAATACCTTCGATGGATCAGTATA-AAGATTTCGCATGATATGAGTATATG 140703 ||| ||||||||||| |||||| ||| | || |||| || ||||||||||| | Sbjct 1999 AATATCATCAAATACTACAGATGGA-GAGTTGACAATGTTTCTAATTATATGAGTATAAG 2057 Query 140704 AACGAGAGTGAATGGTTTCACTGAATGTCCATGTAGCAACCCATGTATCTAATGAAGGGT 140763 ||||||| || || ||||| || | |||||| |||||||||| |||| | ||| Sbjct 2058 AACGAGAATGTATAGTTTCTGAAAAAGACCATGTTTCAACCCATGTCTCTAGTTCAGGAA 2117 Query 140764 CAGAAATCAGTGCCATAAGTACCGCAGATGGGGCCCTGCCTTGGATAGAATCTAATAATG 140823 |||||| | || | || | | ||| || ||||| |||||||| | ||||| Sbjct 2118 TAGAAATGATTGGTAAAAAAGCTATATTAGGGCTTCTTCCTTGAATAGAATCAAGTAATG 2177 Query 140824 ATTGATACTTAAGATTGTTTGTAAAGATATCCTGTTGAAACTGAGGAAGCTTATTGAACT 140883 |||||| || | ||| | |||| |||| | || | | ||| | || ||||| Sbjct 2178 TTTGATATTTTAAATTACTAATAAAAATATGTTTTTCATTATTAGGTAAGTT-TTGAAAA 2236 Query 140884 GCGCAGAGTCCAACATCA-AG---TTTACCTCTTCCGGGCGCCaaaaaaaCGACAATTGC 140939 | | || | || | || | || ||||| || | ||||||||| || ||||| Sbjct 2237 TC---TATTCTATCACGAGAGAGATCTATTTCTTCAGGTCTCCAAAAAAATGATAATTGT 2293 Query 140940 TTTTCAATAAGCTCTTCAAAAACTTTAT 140967 |||||||| | | |||||||| |||| Sbjct 2294 TTTTCAATTAATTGTTCAAAAATATTAT 2321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 534947125423200