Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_025446.1 Length=157308 Score E Sequences producing significant alignments: (Bits) Value seq30067 127 2e-24 seq159469 111 2e-19 seq408088 100 3e-16 >seq30067 Length=5021 Score = 127 bits (140), Expect = 2e-24 Identities = 269/399 (67%), Gaps = 2/399 (1%) Strand=Plus/Plus Query 4042 CCAACACCCATCATGTCCGGCGTTCGTACCCCAACCCGCCAATTCAGTTCTTGTGTTCTT 4101 |||||||| || ||||| || || | || || || || ||||| |||||||||||| | Sbjct 3320 CCAACACCAATTATGTCTGGAGTCAGAACTCCTACTCGTCAATTTAGTTCTTGTGTTTTA 3379 Query 4102 ATCAAAACCGGTGACACTTTGGACTCAATCAATGCTACAGCCAAAAGTATTGTTGATTAT 4161 || || | ||| | ||| | || || ||||| ||| | | ||||||| | ||| Sbjct 3380 ATTGAATGTGCTGATAATTTAAATTCCATTAATGCGACAACTAGCTCTATTGTTAAATAT 3439 Query 4162 GTATCCAAACGCGCTGGGATCGGATTTGATGTCGGAGCAATTCGTGGCATCGGTAGCCCT 4221 || ||| |||| ||||| || || || ||| ||| |||||| | | || || ||| Sbjct 3440 GTTTCCCAACGTGCTGGAATTGGTATTAATGCAGGACAAATTCGCGCATTAGGAAGTCCT 3499 Query 4222 ATCCGAAAAGGTGAAATGGTGCACACAGGTCTGGTTCCTTTCATAAAATATCTGACTGGG 4281 || |||| || ||| | || || ||| | ||||| ||| || | | Sbjct 3500 ATTAGAAACGGAGAAGCATTTCATACTGGTTGTATACCTTTTTATAAACATTTTCAAAGC 3559 Query 4282 GCATTAAAGTCTTGCTCTCAAGGCGGTATTCGTGGCGGATCAGCAACT-TGCTATATCCC 4340 || |||| ||||| |||||||| ||| || | || ||| | |||||| | | ||| || Sbjct 3560 GCTGTAAAATCTTGTTCTCAAGGAGGTGTTAGAGGTGGAGCTGCAACTATTTTTTAT-CC 3618 Query 4341 TATCTGGCATTATCAATTTGATGATGTTGTGGTCCTGAAGAACAACCGTGGTCTTGAAGA 4400 || ||||||| | || |||| || | | || | || |||||| | || ||||||| Sbjct 3619 AATATGGCATTTTGAAGTTGAAAATTTATTAGTTTTAAAAAACAACAGGGGAATTGAAGA 3678 Query 4401 GAACCGTGAACGCCGTATCGACTATGGTATTCAGATCAA 4439 || | | ||| | | ||||||||| ||||| || || Sbjct 3679 AAATAGAGTACGTCATGTCGACTATGCAATTCAAATTAA 3717 >seq159469 Length=1977 Score = 111 bits (122), Expect = 2e-19 Identities = 221/322 (69%), Gaps = 4/322 (1%) Strand=Plus/Minus Query 4042 CCAACACCCATCATGTCCGGCGTTCGTACCCCAACCCGCCAATTCAGTTCTTGTGTTCTT 4101 ||||||||||| ||||| || || || || || || || || || |||||||||||| | Sbjct 1689 CCAACACCCATTATGTCTGGAGTACGAACTCCTACTCGTCAGTTTAGTTCTTGTGTTTTA 1630 Query 4102 ATCAAAACCGGTGACACTTTGGACTCAATCAATGCTACAGCCAAAAGTATTGTTGATTAT 4161 ||| || | ||| | ||| |||| || |||||||| | | ||||||| | ||| Sbjct 1629 ATCGAATGTGCTGATAATTTAAACTCTATTAATGCTACTACTAGCTCTATTGTTAAATAT 1570 Query 4162 GTATCCAAACGCGCTGGGATCGGATTTGATGTCGGAGCAATTCGTGGCATCGGTAGCCCT 4221 ||||| |||| ||||| ||||| || ||| ||| |||||| | | || || ||| Sbjct 1569 GTATCACAACGTGCTGGAATCGGTATTAATGCGGGACAAATTCGCGCGTTAGGAAGTCCT 1510 Query 4222 ATCCGAAAAGGTGAAATGGTGCACACAGGTCTGGTTCC-TTTCATAAAATATCTGACTGG 4280 || |||| |||||| | || || ||| | || ||| ||||| | | | | Sbjct 1509 ATTAGAAACGGTGAAGCATTTCATACTGGTTGTATACCTTTTTATAAACACTTTCA-AAG 1451 Query 4281 GGCATTAAAGTCTTGCTCTCAAGGCGGTATTCGTGGCGGATCAGCAACT-TGCTATATCC 4339 || |||| || || || |||||||| | | || ||| | |||||| | | ||| | Sbjct 1450 TGCCGTAAAATCCTGTTCACAAGGCGGAGTGAGAGGAGGAGCTGCAACTATTTTTTAT-C 1392 Query 4340 CTATCTGGCATTATCAATTTGA 4361 | || ||||||| | || |||| Sbjct 1391 CAATATGGCATTTTGAAGTTGA 1370 >seq408088 Length=780 Score = 100 bits (110), Expect = 3e-16 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 76787 TTGGTGACCCTGGCTGGACTTGAACCAGCGACCAATCGATTATGAGTCGACTGCTCTAAC 76846 ||| || |||| |||||| |||||||||||||||| ||||||||||||| ||||||| || Sbjct 697 TTGATGGCCCTTGCTGGATTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTCTTAC 638 Query 76847 CACTGAGCTACGGGGCCA 76864 |||||||||| |||||| Sbjct 637 CACTGAGCTAAAGGGCCA 620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 497746237300800