Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_025447.1 Length=348532 Score E Sequences producing significant alignments: (Bits) Value seq159469 131 4e-25 seq30067 123 5e-23 >seq159469 Length=1977 Score = 131 bits (144), Expect = 4e-25 Identities = 350/530 (66%), Gaps = 4/530 (1%) Strand=Plus/Minus Query 24271 CCAACACCTATTATGGCAGGTCTACGTACTAACACACGTCAGTTTAGTTCTTGTGTAGTA 24330 |||||||| |||||| | || |||| ||| || |||||||||||||||||||| || Sbjct 1689 CCAACACCCATTATGTCTGGAGTACGAACTCCTACTCGTCAGTTTAGTTCTTGTGTTTTA 1630 Query 24331 CT-GAACGTTGGTGATAGTTTAGATAGTATTGGTTCATCAAATCACGCCATTCTACGCTA 24389 | ||| | || ||||| |||| | |||| | | | | | | | ||| | || Sbjct 1629 ATCGAATG-TGCTGATAATTTAAACTCTATTAATGCTACTACTAGCTCTATTGTTAAATA 1571 Query 24390 TATCTCACGTAAAGCTGGACTAGGTATTAATATGGGCCGTATTCGTGCTCTAGACTCTGA 24449 | | |||| |||||| | ||||||||| ||| | ||||| || ||| | Sbjct 1570 TGTATCACAACGTGCTGGAATCGGTATTAATGCGGGACAAATTCGCGCGTTAGGAAGTCC 1511 Query 24450 GATTCGTTCAGGTGATGCAGTACATACTGGGTTGATTCCTTTTATCGCAGCAACTGCTAA 24509 ||| | ||||| ||| | |||||||| | || |||||| | | || | | || Sbjct 1510 TATTAGAAACGGTGAAGCATTTCATACTGGTTGTATACCTTTT-TATAAACACTTTCAAA 1452 Query 24510 G-ACCGTTAAAAGCTGCTCACAGGGTGGTGTGCGTGGTGGTGCAGCAACTGTTCACTTCC 24568 | |||| ||| ||| ||||| || || ||| | || || || |||||| || | | Sbjct 1451 GTGCCGTAAAATCCTGTTCACAAGGCGGAGTGAGAGGAGGAGCTGCAACTATTTTTTATC 1392 Query 24569 CATTGTGGCATTTGGAGTTTGATAACCTAGTAGTACTTAAAAATAACAAAGGTACAGAGT 24628 || | |||||||| || |||| | || |||| | |||||||| | ||| | || Sbjct 1391 CAATATGGCATTTTGAAGTTGAAAGTTTATTAGTTTTAAAAAATAATAGAGGAATTGAAG 1332 Query 24629 TTAACCGTGTACGTCAACTAGACTATTGTTTCCAAGTAAACAAAACTTTATATCAACGTT 24688 || | || ||||| | || || | ||| | || ||| | |||||| | Sbjct 1331 AAAATAGAGTGCGTCATATTGATTACGCACTTCAAATTAATAAATTAATGTATCAAAGAA 1272 Query 24689 TGGTTGATGGAAAGAACATTACATTCTTTAGTCCTAATGAAGTTCCTGGGCTATATGAAG 24748 || | ||| | | || ||||| ||||||||| ||| ||||||| ||||| |||| Sbjct 1271 TGTTATCAGGAGATATAATAACATTATTTAGTCCTTCTGATGTTCCTGAACTATACGAAG 1212 Query 24749 CATTCTGTTCTGACCAAAAAGAATTTGAAAAACTATATAAAAAATACGAA 24798 ||| | ||| || |||||| |||||||| || | |||| |||| ||| Sbjct 1211 TATTTTTTTCAGATCAAAAAAAATTTGAAGAAATGTATATTCAATATGAA 1162 >seq30067 Length=5021 Score = 123 bits (136), Expect = 5e-23 Identities = 351/533 (66%), Gaps = 10/533 (2%) Strand=Plus/Plus Query 24271 CCAACACCTATTATGGCAGGTCTACGTACTAACACACGTCAGTTTAGTTCTTGTGTAGT- 24329 |||||||| |||||| | || | | ||| || ||||| |||||||||||||| | Sbjct 3320 CCAACACCAATTATGTCTGGAGTCAGAACTCCTACTCGTCAATTTAGTTCTTGTGTTTTA 3379 Query 24330 ACTGAACGTTGGTGATAGTTTAGATAGTATTGGTTCATCAAATCACGCCATTCTACGCTA 24389 | |||| | || ||||| |||| || ||| | | ||| | | | ||| | || Sbjct 3380 ATTGAATG-TGCTGATAATTTAAATTCCATTAATGCGACAACTAGCTCTATTGTTAAATA 3438 Query 24390 TATCTC---ACGTAAAGCTGGACTAGGTATTAATATGGGCCGTATTCGTGCTCTAGACTC 24446 | | || |||| |||||| | ||||||||| || | ||||| || ||| Sbjct 3439 TGTTTCCCAACGT---GCTGGAATTGGTATTAATGCAGGACAAATTCGCGCATTAGGAAG 3495 Query 24447 TGAGATTCGTTCAGGTGATGCAGTACATACTGGGTTGATTCCTTTTATCGCAGCAACTGC 24506 | ||| | || || ||| | |||||||| | || |||||| | | || | | Sbjct 3496 TCCTATTAGAAACGGAGAAGCATTTCATACTGGTTGTATACCTTTT-TATAAACATTTTC 3554 Query 24507 TAAGACCGTTAAAAGC-TGCTCACAGGGTGGTGTGCGTGGTGGTGCAGCAACTGTTCACT 24565 ||| | ||||| | || || || || ||||| | ||||| || |||||| || | Sbjct 3555 AAAGCGCTGTAAAATCTTGTTCTCAAGGAGGTGTTAGAGGTGGAGCTGCAACTATTTTTT 3614 Query 24566 TCCCATTGTGGCATTTGGAGTTTGATAACCTAGTAGTACTTAAAAATAACAAAGGTACAG 24625 ||| | |||||||| || |||| || || |||| | ||||| |||| || | | Sbjct 3615 ATCCAATATGGCATTTTGAAGTTGAAAATTTATTAGTTTTAAAAAACAACAGGGGAATTG 3674 Query 24626 AGTTTAACCGTGTACGTCAACTAGACTATTGTTTCCAAGTAAACAAAACTTTATATCAAC 24685 | || | |||||||| | |||||| | ||| | || ||| | |||||| Sbjct 3675 AAGAAAATAGAGTACGTCATGTCGACTATGCAATTCAAATTAATAAATTCATGTATCAAA 3734 Query 24686 GTTTGGTTGATGGAAAGAACATTACATTCTTTAGTCCTAATGAAGTTCCTGGGCTATATG 24745 | || | ||||| | || ||| | ||||||||| || ||||||| | |||||| Sbjct 3735 GAATGTTATCAGGAAACCAAATAACACTATTTAGTCCTTCCGATGTTCCTGAGTTATATG 3794 Query 24746 AAGCATTCTGTTCTGACCAAAAAGAATTTGAAAAACTATATAAAAAATACGAA 24798 ||| ||| | |||| | |||||| |||||||| || |||||| |||| ||| Sbjct 3795 AAGTATTTTTTTCTAATCAAAAAAAATTTGAAGAAATATATATTCAATATGAA 3847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102653225549590