Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_025449.1 Length=166783 Score E Sequences producing significant alignments: (Bits) Value seq30067 192 6e-44 >seq30067 Length=5021 Score = 192 bits (212), Expect = 6e-44 Identities = 323/465 (69%), Gaps = 2/465 (0%) Strand=Plus/Minus Query 138608 CATCAAATCATTCAGCTGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACGCC 138667 ||| || | ||| | |||| |||| || | |||||| | | |||||||| | || Sbjct 3727 CATGAATTTATTAATTTGAATTGCATAGTCGACATGACGTACTCTATTTTCTTCAATTCC 3668 Query 138668 TTTGTTATTTTTCAAAACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGC 138727 |||| ||||| ||||| | | |||||||||||| |||||||| || |||||| || Sbjct 3667 CCTGTTGTTTTTTAAAACTAATAAATTTTCAACTTCAAAATGCCATATTGGATAAAAAAT 3608 Query 138728 AGTAGCAGCGCCGCCACGAATTCCACCCTGTGAACATGATTTAACTGCAGTCTGAAAATG 138787 ||| ||||| || || | || || || || ||||| ||||| || || | |||||||| Sbjct 3607 AGTTGCAGCTCCACCTCTAACACCTCCTTGAGAACAAGATTTTACAGCGCTTTGAAAATG 3548 Query 138788 TTTCCAAAAAGGAATAACACCAGTATGACGTACTTCACCCATGCCAATCTTAGAACCTTC 138847 ||| ||||||| ||| |||||||||| | |||| || | | ||| | ||| Sbjct 3547 TTTATAAAAAGGTATACAACCAGTATGAAATGCTTCTCCGTTTCTAATAGGACTTCCTAA 3488 Query 138848 AGCACGAATCATACCAACGTTAATACCAATTCCAGCGCGTTTAGAGATATATTCAACAAT 138907 || ||||| || | ||||||||||||||||| |||| || | ||||| |||||| Sbjct 3487 TGCGCGAATTTGTCCTGCATTAATACCAATTCCAGCACGTTGGGAAACATATTTAACAAT 3428 Query 138908 TGAAGCGGAAGCCTTATTGATAGACTTCAGCGAATCACCTGCCTCAATAACAACGCATGA 138967 || | | | ||| || || || | |||| | ||||| | ||| || || Sbjct 3427 AGAGCTAGTTGTCGCATTAATGGAATTTAAATTATCAGCACATTCAATTAAAACACAAGA 3368 Query 138968 ACTGAACTGTCGAGTCGGAGTAC-GACAACCAGCCATAATAGGAGTTGGCAATGAAATCT 139026 ||| || || ||||| ||||| | ||| |||| |||||| || ||||| |||||||| | Sbjct 3367 ACTAAATTGACGAGTAGGAGTTCTGAC-TCCAGACATAATTGGTGTTGGTAATGAAATTT 3309 Query 139027 GTCGAGTAGATACTGCTTCATAAAAACGAATAACATGTTTTAATC 139071 |||||| | || | ||||||||| || || |||| || Sbjct 3308 TAAAAGTAGAAATAGCATTGTAAAAACGATGAATATAATTTATTC 3264 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 527734191610800