Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq64520 484 2e-132 seq836247 185 3e-42 seq533404 154 4e-33 seq348021 109 2e-19 seq81374 98.7 3e-16 seq10361 82.4 2e-11 >seq64520 Length=3547 Score = 484 bits (536), Expect = 2e-132 Identities = 597/806 (74%), Gaps = 10/806 (1%) Strand=Plus/Minus Query 19510 TAACTGGGTCACTTCGACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGAT 19569 ||||||| | || ||| | ||||||||||| |||| |||||||| ||||||| Sbjct 801 TAACTGGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGAT 742 Query 19570 TCCGTGTCTCCTTGCAGCCACCATCTGC-TTCATTATTGCATTCATTGCGGCTCCACCAG 19628 || | || ||| || | |||| || ||||| || |||||||| ||||| |||| Sbjct 741 CCC-TACCTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATTGCTGCTCCTCCAG 683 Query 19629 TTGACATTGATGGCATCCGCGAACCCGTATCCGGTAGCCTTCTTTATGGAAACAACATCA 19688 | || |||||||| || || ||||| || || || || |||||||||||||| || | Sbjct 682 TGGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAATATTA 623 Query 19689 TATCGGGAGCCGTCGTTCCGAG--CAGCAATGCCATCGGACTACACTTCTACCCAATTTG 19746 | || || ||| | |||| | | ||| || || || | || || |||||||| || Sbjct 622 TTTCAGGTGCCATTATTCCTACTTCTGCA--GCTATAGGTTTGCATTTTTACCCAATATG 565 Query 19747 GGAAGCTAGTTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTT 19806 |||||| || ||||||||||| | ||||| || || || | |||| | || | Sbjct 564 GGAAGCAGCATCCGTTGATGAATGGTTATACAATGGTGGTCCTTATGAACTAATTGTTCT 505 Query 19807 CCACTTCCTCATTGGCATCTATGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACT 19866 |||||| | |||| | | ||||||||| || |||||||| ||||| | || || Sbjct 504 ACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAGCTTAGTTTCCGTCT 445 Query 19867 AGGAATGAGGCCTTGGATTTGTGTTGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGT 19926 || ||| | ||||||||| |||||| || || ||||| |||||||| || |||| || Sbjct 444 GGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCGACTGCTGT 385 Query 19927 CTTTCTCG-TCTACCCGTTTGGTCAGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCT 19985 ||||| | ||||||| ||||||| || ||||| || |||| ||||||| | || || | Sbjct 384 -TTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATTT 326 Query 19986 CGGGTACGTTCAACTACATGTTGGTATTCCAAGCCGAACATAACATTCTCATGCACCCGT 20045 | ||||| ||||||| |||| | |||||||| || || || ||||| || |||||||| | Sbjct 325 CTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCAT 266 Query 20046 TCCACATGCTTGGTGTGGCTGGTGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGTT 20105 | |||||||| || || |||||||||||||| || || ||||| ||||| ||||| |||| Sbjct 265 TTCACATGCTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTT 206 Query 20106 CGCTTGTTACGTCCTCGCTTG-TGCGTGAGACTACTGAACAGGAAAGTCAGAACTATGGT 20164 | | || || | || | ||| | | || || || ||| | ||| | || | ||| Sbjct 205 CTTTGGTAACCT-CTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGT 147 Query 20165 TACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTTGGA 20224 |||| || || ||||||||||| || ||||| |||||||||||||||||||| ||||| Sbjct 146 TACAGATTCGGTCAAGAAGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGGC 87 Query 20225 CGTTTGATCTTCCAATACGCTTCTTTCAACAATAGCCGTTCTCTACACTTCTTCCTTGCT 20284 || |||||||||||||| ||| ||||||||| |||||| |||| |||||||| ||| Sbjct 86 CGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCCTAGCT 27 Query 20285 GCCTGGCCGGTGGTAGGGATTTGGTT 20310 || ||||| || ||||| || ||||| Sbjct 26 GCTTGGCCTGTAGTAGGTATCTGGTT 1 >seq836247 Length=317 Score = 185 bits (204), Expect = 3e-42 Identities = 220/296 (74%), Gaps = 2/296 (1%) Strand=Plus/Plus Query 19961 TCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTACATGTTGGTATTCCAAGCC 20020 || |||| ||||||| | | || | ||||| ||||||| |||| | |||||||| || Sbjct 3 TCTGATGGTATGCCTCTAAGAATTTATGGTACTTTCAACTTCATGATTGTATTCCAGGCT 62 Query 20021 GAACATAACATTCTCATGCACCCGTTCCACATGCTTGGTGTGGCTGGTGTATTCGGTGGG 20080 || || ||||| || |||||||| || |||||||| | || || |||||| | || Sbjct 63 GAGCACAACATCCTTATGCACCCATTTCACATGCTATGCGTAACTATTGTATTTGACGGC 122 Query 20081 TCACTATTCAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTGTGC-GTGAGACTAC 20139 || ||||| ||||| ||||| ||||| | || || || | | ||| | | || || || Sbjct 123 TCCCTATTTAGTGCTATGCATGGTTCTTTGGTAACCTC-TAGTTTGATCAGGGAAACCAC 181 Query 20140 TGAACAGGAAAGTCAGAACTATGGTTACAAGTTTGGGCAAGAAGAAGAGACCTATAACAT 20199 ||| | || | || | ||||||| || | ||||||||||| || ||||| || Sbjct 182 AGAAAATAAATCTGCTAATGAAGGTTACATATTCAGTCAAGAAGAAGAAACTTATAATAT 241 Query 20200 CGTAGCCGCTCATGGTTACTTTGGACGTTTGATCTTCCAATACGCTTCTTTCAACA 20255 |||||||||||||||||| ||||| || |||||||||||||| ||| |||||||| Sbjct 242 CGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACA 297 >seq533404 Length=557 Score = 154 bits (170), Expect = 4e-33 Identities = 175/235 (74%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 20248 TTTCAACAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTG 20307 ||||||||| |||||| || | |||||||| ||||| ||||| || ||||| || || Sbjct 555 TTTCAACAACTCTCGTTCTTTAAATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTG 496 Query 20308 GTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTCAACTTTAACCA 20367 |||| |||| || || | || ||||| || || || || |||||||| || ||||| Sbjct 495 GTTCACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCA 436 Query 20368 GTCCCTTCTCGACAACAATGGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGC 20427 || | | || | | || ||||| ||| ||||||||||||| || | || ||||| Sbjct 435 ATCGGTAGTTGATAGTCAAGGCCGTGTAATTAATACTTGGGCTGATATCATTAACCGTGC 376 Query 20428 TAATCTCGGGTTTGAGGTGATGCATGAACGGAATGCTCATAACTTCCCACTTGAC 20482 ||| || || | || || ||||||||||| ||||||||||| ||||| || ||| Sbjct 375 TAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAATTTCCCTCTAGAC 321 >seq348021 Length=939 Score = 109 bits (120), Expect = 2e-19 Identities = 81/95 (85%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 20162 GGTTACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTT 20221 ||||| | || || ||||||||||| || ||||| |||||||||||||||||||| ||| Sbjct 843 GGTTATAGATTCGGTCAAGAAGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTT 902 Query 20222 GGACGTTTGATCTTCCAATACGCTTCTTTCAACAA 20256 || || |||||||||||||| ||| ||||||||| Sbjct 903 GGCCGATTGATCTTCCAATATGCTAGTTTCAACAA 937 >seq81374 Length=3119 Score = 98.7 bits (108), Expect = 3e-16 Identities = 119/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 19888 TGTTGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCGTCTACCCGTTTGG 19947 |||||| || || |||| |||||| || || || || | ||||||| |||| Sbjct 669 TGTTGCATATTCAACTCCTATTGCAGTTGCGACTATTGTTTTCTTAATCTACCCAATTGG 610 Query 19948 TCAGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTACATGTT 20007 ||| || ||||| || ||| ||||||| | | || | ||||| ||||||| |||| | Sbjct 609 TCAAGGAAGCTTTTCTAATGGTATGCCTCTATGAATTTTTGGTACTTTCAACTTCATGAT 550 Query 20008 GGTATTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCA 20049 ||||||||||||||||| ||||| || ||||| || || || Sbjct 549 TGTATTCCAAGCCGAACACAACATCCTTATGCATCCATTGCA 508 >seq10361 Length=7172 Score = 82.4 bits (90), Expect = 2e-11 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 20345 CTGAACGGTTTCAACTTTAACCAGTCCCTTCTCGACAACAATGGTCGTGTCATTGATACT 20404 || || |||||||| || ||||| || | | || | | |||| ||| ||| |||| Sbjct 371 CTAAATGGTTTCAATTTCAACCAATCGGTAGTTGATAGTCAAGGTCATGTAATTAGTACT 312 Query 20405 TGGGCTGACATTCTCAATCGTGCTAATCTCGGGTTTGAGGTGATGCATGAACGGAATGCT 20464 ||||||| || | ||| |||||| || || | || || ||||||||||| |||||| Sbjct 311 TGGGCTGGAATCATTAATTTTGCTAACCTTGGTATCGAAGTTATGCATGAACGTAATGCT 252 Query 20465 CATAACTTCCCACTTGAC 20482 ||||| ||||| || ||| Sbjct 251 CATAATTTCCCTCTAGAC 234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147280414000380