Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_025461.1 Length=45871 Score E Sequences producing significant alignments: (Bits) Value seq64520 462 6e-126 seq836247 183 9e-42 seq533404 156 1e-33 seq348021 109 2e-19 seq10361 86.0 2e-12 seq81374 80.6 8e-11 >seq64520 Length=3547 Score = 462 bits (512), Expect = 6e-126 Identities = 590/805 (73%), Gaps = 8/805 (1%) Strand=Plus/Minus Query 28638 TAACTGGGTCACTTCGACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGAT 28697 ||||||| | || ||| | ||||||||||| |||| |||||||| ||||||| Sbjct 801 TAACTGGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGAT 742 Query 28698 TCCGTGTCTCCTTGCAGCCACCATCTGC-TTCATTATTGCATTCATTGCGGCACCACCAG 28756 || | || ||| || | |||| || ||||| || |||||||| || || |||| Sbjct 741 CCC-TACCTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATTGCTGCTCCTCCAG 683 Query 28757 TTGACATTGATGGCATCCGCGAACCTGTCGCTGGAAGTCTTCTCTATGGAAACAACATCA 28816 | || |||||||| || || |||||||| ||||| ||| || ||||||||||| || | Sbjct 682 TGGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAATATTA 623 Query 28817 TATCGGGAGCCGTCGTACCGAG--CAGCAATGCCATCGGACTACACTTCTACCCAATTTG 28874 | || || ||| | | || | | ||| || || || | || || |||||||| || Sbjct 622 TTTCAGGTGCCATTATTCCTACTTCTGCA--GCTATAGGTTTGCATTTTTACCCAATATG 565 Query 28875 GGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTT 28934 |||||| || ||||||||||| | ||||| || || || | |||| | || | Sbjct 564 GGAAGCAGCATCCGTTGATGAATGGTTATACAATGGTGGTCCTTATGAACTAATTGTTCT 505 Query 28935 CCACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACT 28994 |||||| | |||| || | ||||||||| || |||||||| ||||| | || || Sbjct 504 ACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAGCTTAGTTTCCGTCT 445 Query 28995 AGGAATGAGGCCGTGGATTTGTGTCGCATACTCAGCTCCCGTCGCAGCGGCATCTGCGGT 29054 || ||| | || |||||| ||| ||||| |||||||| || ||||| || |||| || Sbjct 444 GGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCGACTGCTGT 385 Query 29055 TTTCCTCGTCTACCCATTCGGTCAAGGTTCTTTTAGCGACGCGATGCCTTTGGGTATTTC 29114 |||| | |||||||| | |||||||| ||| || | |||||| | || ||||| Sbjct 384 TTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATTTC 325 Query 29115 AGGCACCTTCAACTACATGCTGGTGTTCCAAGCCGAACATAACATTCTCATGCACCCGTT 29174 || || ||||||| |||| | || ||||| || || || ||||| || |||||||| || Sbjct 324 TGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATT 265 Query 29175 CCACATGCTGGGCGTTGCTGGAGTGTTCGGTGGCTCGCTATTTAGTGCAATGCACGGTTC 29234 |||||||| ||||| ||||| || ||||| ||||| ||||||||||| ||||| ||||| Sbjct 264 TCACATGCTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTC 205 Query 29235 GCTTGTCACGTCCTCGCTTG-TGCGTGAGACGACTGAAGACATCTCTCAGAACTATGGTT 29293 | || || | || | ||| | | || || || ||| | ||| || | |||| Sbjct 204 TTTGGTAACCT-CTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTT 146 Query 29294 ACAAGTTTGGACAAGAAGAAGAGACTTATAACATCGTAGCCGCTCACGGTTACTTTGGAC 29353 ||| || || ||||||||||| |||||||| |||||||||||||| ||||| ||||| | Sbjct 145 ACAGATTCGGTCAAGAAGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGGCC 86 Query 29354 GTTTGATCTTCCAATATGCTTCTTTCAATAATAGCCGTTCTCTACACTTCTTCCTTGCTG 29413 | |||||||||||||||||| |||||| || |||||| |||| |||||||| |||| Sbjct 85 GATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCCTAGCTG 26 Query 29414 CCTGGCCGGTGGTAGGGATTTGGTT 29438 | ||||| || ||||| || ||||| Sbjct 25 CTTGGCCTGTAGTAGGTATCTGGTT 1 >seq836247 Length=317 Score = 183 bits (202), Expect = 9e-42 Identities = 213/285 (75%), Gaps = 2/285 (1%) Strand=Plus/Plus Query 29098 ATGCCTTTGGGTATTTCAGGCACCTTCAACTACATGCTGGTGTTCCAAGCCGAACATAAC 29157 |||||| | | |||| || || ||||||| |||| | || ||||| || || || ||| Sbjct 12 ATGCCTCTAAGAATTTATGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAAC 71 Query 29158 ATTCTCATGCACCCGTTCCACATGCTGGGCGTTGCTGGAGTGTTCGGTGGCTCGCTATTT 29217 || || |||||||| || |||||||| |||| || || || | ||||| |||||| Sbjct 72 ATCCTTATGCACCCATTTCACATGCTATGCGTAACTATTGTATTTGACGGCTCCCTATTT 131 Query 29218 AGTGCAATGCACGGTTCGCTTGTCACGTCCTCGCTTGTGC-GTGAGACGACTGAAGACAT 29276 ||||| ||||| ||||| | || || || | | ||| | | || || || ||| | | Sbjct 132 AGTGCTATGCATGGTTCTTTGGTAACCTC-TAGTTTGATCAGGGAAACCACAGAAAATAA 190 Query 29277 CTCTCAGAACTATGGTTACAAGTTTGGACAAGAAGAAGAGACTTATAACATCGTAGCCGC 29336 ||| || | ||||||| || | ||||||||||| |||||||| ||||||||||| Sbjct 191 ATCTGCTAATGAAGGTTACATATTCAGTCAAGAAGAAGAAACTTATAATATCGTAGCCGC 250 Query 29337 TCACGGTTACTTTGGACGTTTGATCTTCCAATATGCTTCTTTCAA 29381 ||| ||||| ||||| || |||||||||||||||||| |||||| Sbjct 251 TCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAA 295 >seq533404 Length=557 Score = 156 bits (172), Expect = 1e-33 Identities = 175/234 (75%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 29376 TTTCAATAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTG 29435 |||||| || |||||| || | |||||||| ||||| ||||| || ||||| || || Sbjct 555 TTTCAACAACTCTCGTTCTTTAAATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTG 496 Query 29436 GTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTTAACTTTAACCA 29495 |||| |||| || || | || ||||| || || || || ||||| || || ||||| Sbjct 495 GTTCACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCA 436 Query 29496 GTCGCTTCTCGACAACAATGGTCGTGTCATTAATACTTGGGCTGATGTTCTCAATCGCGC 29555 ||| | | || | | || ||||| |||||||||||||||||| | | || || || Sbjct 435 ATCGGTAGTTGATAGTCAAGGCCGTGTAATTAATACTTGGGCTGATATCATTAACCGTGC 376 Query 29556 TAACCTCGGCTTTGAAGTAATGCATGAGCGTAATGCTCATAACTTCCCACTTGA 29609 |||||| || | ||||| |||||||| |||||||||||||| ||||| || || Sbjct 375 TAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAATTTCCCTCTAGA 322 >seq348021 Length=939 Score = 109 bits (120), Expect = 2e-19 Identities = 81/95 (85%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 29290 GGTTACAAGTTTGGACAAGAAGAAGAGACTTATAACATCGTAGCCGCTCACGGTTACTTT 29349 ||||| | || || ||||||||||| |||||||| |||||||||||||| ||||| ||| Sbjct 843 GGTTATAGATTCGGTCAAGAAGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTT 902 Query 29350 GGACGTTTGATCTTCCAATATGCTTCTTTCAATAA 29384 || || |||||||||||||||||| |||||| || Sbjct 903 GGCCGATTGATCTTCCAATATGCTAGTTTCAACAA 937 >seq10361 Length=7172 Score = 86.0 bits (94), Expect = 2e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 29473 CTGAACGGTTTTAACTTTAACCAGTCGCTTCTCGACAACAATGGTCGTGTCATTAATACT 29532 || || ||||| || || ||||| ||| | | || | | |||| ||| |||| |||| Sbjct 371 CTAAATGGTTTCAATTTCAACCAATCGGTAGTTGATAGTCAAGGTCATGTAATTAGTACT 312 Query 29533 TGGGCTGATGTTCTCAATCGCGCTAACCTCGGCTTTGAAGTAATGCATGAGCGTAATGCT 29592 ||||||| | | ||| |||||||| || | ||||| |||||||| ||||||||| Sbjct 311 TGGGCTGGAATCATTAATTTTGCTAACCTTGGTATCGAAGTTATGCATGAACGTAATGCT 252 Query 29593 CATAACTTCCCACTTGA 29609 ||||| ||||| || || Sbjct 251 CATAATTTCCCTCTAGA 235 >seq81374 Length=3119 Score = 80.6 bits (88), Expect = 8e-11 Identities = 115/162 (71%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 29016 TGTCGCATACTCAGCTCCCGTCGCAGCGGCATCTGCGGTTTTCCTCGTCTACCCATTCGG 29075 ||| ||||| ||| |||| | |||| || || |||||| | |||||||| | || Sbjct 669 TGTTGCATATTCAACTCCTATTGCAGTTGCGACTATTGTTTTCTTAATCTACCCAATTGG 610 Query 29076 TCAAGGTTCTTTTAGCGACGCGATGCCTTTGGGTATTTCAGGCACCTTCAACTACATGCT 29135 |||||| ||| | | |||||| | | |||| || || ||||||| |||| | Sbjct 609 TCAAGGAAGCTTTTCTAATGGTATGCCTCTATGAATTTTTGGTACTTTCAACTTCATGAT 550 Query 29136 GGTGTTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCA 29177 || |||||||||||||| ||||| || ||||| || || || Sbjct 549 TGTATTCCAAGCCGAACACAACATCCTTATGCATCCATTGCA 508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145139719514060