Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_025464.1 Length=44147 Score E Sequences producing significant alignments: (Bits) Value seq64520 508 2e-139 seq836247 178 4e-40 seq533404 163 8e-36 seq147675 163 8e-36 seq71880 100 8e-17 seq10361 87.8 5e-13 >seq64520 Length=3547 Score = 508 bits (562), Expect = 2e-139 Identities = 605/811 (75%), Gaps = 10/811 (1%) Strand=Plus/Minus Query 18724 TTTTGTGACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTG 18783 || ||| ||||| ||||||| || || ||||||||||| || || |||||||| || Sbjct 806 TTCTGTAACTGGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 747 Query 18784 ATGATTCCGTGTCTCCTTG-CAGCTACTATTTGT-TTCATTATTGCCTTCATTGCTGCAC 18841 ||||| || | || ||| | || ||| | ||| || ||||| |||||||||||||| | Sbjct 746 ATGATCCC-TACCTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATTGCTGCTC 689 Query 18842 CTCCTGTAGACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAACA 18901 |||| || || |||||||| || || || |||||| | || ||| ||||||||||||| Sbjct 688 CTCCAGTGGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACA 629 Query 18902 ACATCATATCGGGAGCCGTCGTTCCGAG--CAGCAATGCCATCGGACTACACTTCTACCC 18959 | || || || || ||| | |||| | | ||| || || || | || || ||||| Sbjct 628 ATATTATTTCAGGTGCCATTATTCCTACTTCTGCA--GCTATAGGTTTGCATTTTTACCC 571 Query 18960 AATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGT 19019 ||| |||||||| || ||||||||||| | ||||| || || || | |||| | Sbjct 570 AATATGGGAAGCAGCATCCGTTGATGAATGGTTATACAATGGTGGTCCTTATGAACTAAT 511 Query 19020 GGTCTTCCACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGGAACTTAGCTA 19079 || | |||||| | |||| || | ||||||||| || |||||||| ||||| | Sbjct 510 TGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAGCTTAGTTT 451 Query 19080 TCGACTAGGGATGCGCCCTTGGATTTGTGTTGCCTACTCAGCTCCTGTTGCCGCAGCCTC 19139 || || || ||||| ||||||||| |||||| || |||||||||||||| || || | Sbjct 450 CCGTCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCGAC 391 Query 19140 TGCGGTCTTCCTTGTCTATCCATTTGGTCAAGGTTCCTTTAGCGACGCTATGCCTTTGGG 19199 ||| || ||| | |||| ||| |||||||||| |||| || | ||||||| | || Sbjct 390 TGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGG 331 Query 19200 TATTAGTGGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAACATCCTCATGCA 19259 ||| |||||| ||||||| |||| |||||||||||||||| || |||||||| ||||| Sbjct 330 AATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCA 271 Query 19260 CCCGTTCCACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATTTAGTGCGATGCA 19319 ||| || |||||||| || || |||||||| |||||||| || ||||||||||| ||||| Sbjct 270 CCCATTTCACATGCTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCA 211 Query 19320 CGGTTCGCTTGTTACGTCCTCGCTTG-TGCGTGAAACTACTGAAGAGGTATCTCAGAACT 19378 ||||| | || || | || | ||| | | ||||| || ||| | | |||| || Sbjct 210 TGGTTCTTTGGTAACCT-CTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATG 152 Query 19379 ATGGCTACAAGTTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTGCTCATGGGTATT 19438 | || |||| || || ||||||||||| |||||||| || || || |||||||| |||| Sbjct 151 AAGGTTACAGATTCGGTCAAGAAGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATT 92 Query 19439 TTGGTCGGCTTATTTTCCAGTACGCATCCTTCAACAATAGCCGTTCTCTACATTTCTTTT 19498 |||| || | || ||||| || || |||||||| |||||| |||||||||| Sbjct 91 TTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCC 32 Query 19499 TGGCTGCTTGGCCTGTGGTTGGCATTTGGTT 19529 | |||||||||||||| || || || ||||| Sbjct 31 TAGCTGCTTGGCCTGTAGTAGGTATCTGGTT 1 >seq836247 Length=317 Score = 178 bits (196), Expect = 4e-40 Identities = 225/307 (73%), Gaps = 2/307 (1%) Strand=Plus/Plus Query 19188 TATGCCTTTGGGTATTAGTGGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAA 19247 ||||||| | | ||| |||||| ||||||| |||| |||||||||||||||| || || Sbjct 11 TATGCCTCTAAGAATTTATGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAA 70 Query 19248 CATCCTCATGCACCCGTTCCACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATT 19307 |||||| |||||||| || |||||||| | || || ||| || | ||| || ||||| Sbjct 71 CATCCTTATGCACCCATTTCACATGCTATGCGTAACTATTGTATTTGACGGCTCCCTATT 130 Query 19308 TAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTG-TGCGTGAAACTACTGAAGAGG 19366 |||||| ||||| ||||| | || || | || | ||| | | ||||| || ||| | Sbjct 131 TAGTGCTATGCATGGTTCTTTGGTAACCT-CTAGTTTGATCAGGGAAACCACAGAAAATA 189 Query 19367 TATCTCAGAACTATGGCTACAAGTTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTG 19426 |||| || | || |||| || | ||||||||||| |||||||| || || || | Sbjct 190 AATCTGCTAATGAAGGTTACATATTCAGTCAAGAAGAAGAAACTTATAATATCGTAGCCG 249 Query 19427 CTCATGGGTATTTTGGTCGGCTTATTTTCCAGTACGCATCCTTCAACAATAGCCGTTCTC 19486 ||||||| |||||||| || | || ||||| || || ||||||| | |||| Sbjct 250 CTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAGCTCTCATTCTT 309 Query 19487 TACATTT 19493 ||||||| Sbjct 310 TACATTT 316 >seq533404 Length=557 Score = 163 bits (180), Expect = 8e-36 Identities = 180/240 (75%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 19468 TTCAACAATAGCCGTTCTCTACATTTCTTTTTGGCTGCTTGGCCTGTGGTTGGCATTTGG 19527 |||||||| |||||| || ||||||| | |||||||||||||| || || || ||| Sbjct 554 TTCAACAACTCTCGTTCTTTAAATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGG 495 Query 19528 TTTGCCGCCCTTGGGGTAAGCACCATGGCATTCAACTTGAATGGCTTTAACTTTAACCAG 19587 || | || | || | ||||| ||||| |||||| | ||||| || || || ||||| Sbjct 494 TTCACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAA 435 Query 19588 TCCCTTCTTGACAACAATGGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCT 19647 || | |||| | | || ||||| ||| ||||||||||||| || | || |||||| Sbjct 434 TCGGTAGTTGATAGTCAAGGCCGTGTAATTAATACTTGGGCTGATATCATTAACCGTGCT 375 Query 19648 AACCTCGGCTTTGAGGTAATGCACGAACGTAATGCTCATAACTTCCCACTTGATTTGGCT 19707 ||||| || | || || ||||| ||||||||||||||||| ||||| || || || ||| Sbjct 374 AACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAATTTCCCTCTAGACTTAGCT 315 >seq147675 Length=2096 Score = 163 bits (180), Expect = 8e-36 Identities = 165/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 19051 TACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGGATGCGCCCTTGGATTTGTGTT 19110 || ||||| || |||||||| ||||| | | ||||| ||||| ||||||| | |||| Sbjct 1507 TATATGGGTCGTGAGTGGGAGCTTAGTTTCCATCTAGGTATGCGACCTTGGACTGTTGTT 1448 Query 19111 GCCTACTCAGCTCCTGTTGCCGCAGCCTCTGCGGTCTTCCTTGTCTATCCATTTGGTCAA 19170 || || |||||||||||| | || || |||| | ||| | |||| | | |||||||| Sbjct 1447 GCATATTCAGCTCCTGTTACAGCTGCGACTGCTATTTTCTTGATCTACCTAATTGGTCAA 1388 Query 19171 GGTTCCTTTAGCGACGCTATGCCTTTGGGTATTAGTGGTACGTTCAACTACATGCTTGTA 19230 || |||| || | ||||||| | || ||| |||||| ||||||| |||| ||||| Sbjct 1387 GGAAGCTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTA 1328 Query 19231 TTCCAGGCTGAACATAACATCCTCATGCACCCGTT 19265 ||||||||||| || |||||||| |||||||| || Sbjct 1327 TTCCAGGCTGAGCACAACATCCTTATGCACCCATT 1293 >seq71880 Length=3346 Score = 100 bits (110), Expect = 8e-17 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 19188 TATGCCTTTGGGTATTAGTGGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAA 19247 ||||||| | || ||| |||| | ||||||| || | ||| |||||||||||| || || Sbjct 1573 TATGCCTCTAGGAATTTTTGGTGCTTTCAACTTCACGATTGCATTCCAGGCTGAGCACAA 1632 Query 19248 CATCCTCATGCACCCGTTCCACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATT 19307 |||||| |||||||| || | ||||| || | | |||||| ||||| | || ||||| Sbjct 1633 CATCCTTATGCACCCATTTCGAATGCTAGGCATAGTTGGTGTATTCGGAAGCTCCCTATT 1692 Query 19308 TAGTGCGATGCACGGTTC 19325 ||| ||||| ||||| Sbjct 1693 TAGCATTATGCATGGTTC 1710 >seq10361 Length=7172 Score = 87.8 bits (96), Expect = 5e-13 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 19567 AATGGCTTTAACTTTAACCAGTCCCTTCTTGACAACAATGGTCGTGTCATTGATACTTGG 19626 ||||| || || || ||||| || | |||| | | |||| ||| ||| ||||||| Sbjct 368 AATGGTTTCAATTTCAACCAATCGGTAGTTGATAGTCAAGGTCATGTAATTAGTACTTGG 309 Query 19627 GCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTAATGCACGAACGTAATGCTCAT 19686 |||| || | ||| ||||||||| || | || || ||||| ||||||||||||||| Sbjct 308 GCTGGAATCATTAATTTTGCTAACCTTGGTATCGAAGTTATGCATGAACGTAATGCTCAT 249 Query 19687 AACTTCCCACTTGATTTGGCT 19707 || ||||| || || || ||| Sbjct 248 AATTTCCCTCTAGACTTAGCT 228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139680315232380