Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_025829.1 Length=164999 Score E Sequences producing significant alignments: (Bits) Value seq159469 232 7e-56 seq30067 212 7e-50 >seq159469 Length=1977 Score = 232 bits (256), Expect = 7e-56 Identities = 327/458 (71%), Gaps = 6/458 (1%) Strand=Plus/Plus Query 143805 CATTAGGTCATTCAGTTGAACGCCATAATCCATATGACGGATACGGTTTTCTTCTACACC 143864 ||||| | ||| | ||||| | ||||| |||||||| | | |||||||| | || Sbjct 1282 CATTAATTTATTAATTTGAAGTGCGTAATCAATATGACGCACTCTATTTTCTTCAATTCC 1341 Query 143865 TTTGTTATTTTTCAAAACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGC 143924 | | |||||||| ||||| | | | |||||||||| |||||||| || |||||| || Sbjct 1342 TCTATTATTTTTTAAAACTAATAAACTTTCAACTTCAAAATGCCATATTGGATAAAAAAT 1401 Query 143925 AGTAGCAGCGCCGCCACGAATTCCACCCTGTGAACATGATTTAACTGCAGTCTGAAAATG 143984 ||| ||||| || || | | ||| || |||||||| ||||| || ||| | ||||| || Sbjct 1402 AGTTGCAGCTCCTCCTCTCACTCCGCCTTGTGAACAGGATTTTACGGCACTTTGAAAGTG 1461 Query 143985 TTTCCAAAAAGGAATAACACCAGTATGACGCACTTCACCCATTCCAATCTTAGAACCTTC 144044 ||| ||||||| ||| |||||||||| ||||||| ||| ||| | ||| Sbjct 1462 TTTATAAAAAGGTATACAACCAGTATGAAATGCTTCACCGTTTCTAATAGGACTTCCTAA 1521 Query 144045 GGCACGAATCATACCAACGTTAATACCAATTCCAGCGCGTTTGGAGATATATTCAACAAT 144104 || ||||| || | |||||||| |||||||| |||| || | ||||| |||||| Sbjct 1522 CGCGCGAATTTGTCCCGCATTAATACCGATTCCAGCACGTTGTGATACATATTTAACAAT 1581 Query 144105 TGA---AGCAGAAGCCTTATTGATAGACTTTAATGAATCACCTGCCTCAATAACAACGCA 144161 || || || ||| ||| ||||| ||||| |||| | || || | ||| || Sbjct 1582 AGAGCTAGTAGTAGCATTA---ATAGAGTTTAAATTATCAGCACATTCGATTAAAACACA 1638 Query 144162 TGAACTAAACTGCCGAGTTGGAGTACGGCAACCAGCCATAATAGGGGTTGGCAGTGAAAT 144221 ||||||||||| ||||| ||||| || |||| |||||| || ||||| | |||||| Sbjct 1639 AGAACTAAACTGACGAGTAGGAGTTCGTACTCCAGACATAATGGGTGTTGGTAATGAAAT 1698 Query 144222 CTGTCGAGTAGATACTGCTTCATAAAAACGAATAACAT 144259 | |||||| | ||| | ||||||||| ||| || Sbjct 1699 TTTAAAAGTAGAAATTGCATTATAAAAACGCTTAATAT 1736 >seq30067 Length=5021 Score = 212 bits (234), Expect = 7e-50 Identities = 320/455 (70%), Gaps = 0/455 (0%) Strand=Plus/Minus Query 143814 ATTCAGTTGAACGCCATAATCCATATGACGGATACGGTTTTCTTCTACACCTTTGTTATT 143873 ||| | ||||| |||| || | |||||| | | |||||||| | || |||| || Sbjct 3718 ATTAATTTGAATTGCATAGTCGACATGACGTACTCTATTTTCTTCAATTCCCCTGTTGTT 3659 Query 143874 TTTCAAAACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGC 143933 ||| ||||| | | |||||||||||| |||||||| || |||||| || ||| ||||| Sbjct 3658 TTTTAAAACTAATAAATTTTCAACTTCAAAATGCCATATTGGATAAAAAATAGTTGCAGC 3599 Query 143934 GCCGCCACGAATTCCACCCTGTGAACATGATTTAACTGCAGTCTGAAAATGTTTCCAAAA 143993 || || | || || || || ||||| ||||| || || | ||||||||||| |||| Sbjct 3598 TCCACCTCTAACACCTCCTTGAGAACAAGATTTTACAGCGCTTTGAAAATGTTTATAAAA 3539 Query 143994 AGGAATAACACCAGTATGACGCACTTCACCCATTCCAATCTTAGAACCTTCGGCACGAAT 144053 ||| ||| |||||||||| |||| || ||| ||| | ||| || ||||| Sbjct 3538 AGGTATACAACCAGTATGAAATGCTTCTCCGTTTCTAATAGGACTTCCTAATGCGCGAAT 3479 Query 144054 CATACCAACGTTAATACCAATTCCAGCGCGTTTGGAGATATATTCAACAATTGAAGCAGA 144113 || | ||||||||||||||||| |||| ||| | ||||| |||||| || || Sbjct 3478 TTGTCCTGCATTAATACCAATTCCAGCACGTTGGGAAACATATTTAACAATAGAGCTAGT 3419 Query 144114 AGCCTTATTGATAGACTTTAATGAATCACCTGCCTCAATAACAACGCATGAACTAAACTG 144173 | | ||| || || ||||| |||| | ||||| | ||| || |||||||| || Sbjct 3418 TGTCGCATTAATGGAATTTAAATTATCAGCACATTCAATTAAAACACAAGAACTAAATTG 3359 Query 144174 CCGAGTTGGAGTACGGCAACCAGCCATAATAGGGGTTGGCAGTGAAATCTGTCGAGTAGA 144233 ||||| ||||| | | |||| |||||| || ||||| | |||||| | |||||| Sbjct 3358 ACGAGTAGGAGTTCTGACTCCAGACATAATTGGTGTTGGTAATGAAATTTTAAAAGTAGA 3299 Query 144234 TACTGCTTCATAAAAACGAATAACATGTTTTAATC 144268 | || | ||||||||| || || |||| || Sbjct 3298 AATAGCATTGTAAAAACGATGAATATAATTTATTC 3264 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 522087910820400