Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq86036 109 5e-19 seq102355 105 6e-18 seq40887 95.1 1e-14 seq161151 87.8 2e-12 seq90319 84.2 2e-11 >seq86036 Length=3019 Score = 109 bits (120), Expect = 5e-19 Identities = 144/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987 ||||||| ||||| |||||||||||| | |||||| || || ||||||||||||| Sbjct 698 TTGACTCCTTTTGGATGTTGTAGTCGGCGAGGGTACGGCCGTCCTCAAGCTGTTTACCGG 757 Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047 |||| |||||||||||||| ||||| || ||||| || || ||| || |||| Sbjct 758 CGAAGATGAGACGCTGTTGATCGGGAGGGATTCCTTCCTTGTCTTGAATCTTCGTCTTCA 817 Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107 | || | ||||| | ||| || || | ||| | ||| || || || || |||| Sbjct 818 CGTTGTCGATTGTATCAGAGCTCTCGACCTCCAACGTGATCGTCTTTCCGGTTAGGGTTT 877 Query 132108 TTATGAAAATCTGCATGACT 132127 | | ||| ||||||||| || Sbjct 878 TGACGAAGATCTGCATGCCT 897 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || || || || || ||||| ||| | ||||| ||||||||||||||||||| Sbjct 928 GATTCCTTCTGTATATTGTAATCGGCGAGAGTACGGCCGTCTTCGAGCTGTTTACCGGCG 987 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| ||||| |||||||||||||| || ||||| || || || || ||||| Sbjct 988 AAGATAAGACGTTGTTGATCTGGAGGGATTCCTTCCTTGTCCTGTATCTTCGTTTTCACA 1047 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | ||||||| ||| ||||| | || | ||| ||||| || || ||||| Sbjct 1048 TTGTCGATCGTATCGGAACTCTCGACTTCAAGAGTAATCGTCTTACCGGTTAGGGTTTTC 1107 Query 132110 ATGAAAATCTGCAT 132123 | || |||||||| Sbjct 1108 ACAAAGATCTGCAT 1121 >seq102355 Length=2708 Score = 105 bits (116), Expect = 6e-18 Identities = 143/196 (73%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || |||||||| || ||||| ||| | ||||| ||||||||||||||||||| Sbjct 822 GATTCTTTTTGGATATTGTAATCGGCGAGAGTACGGCCGTCTTCGAGCTGTTTACCGGCG 763 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTAT-CGGTAATTTTTTGTTTCAA 132048 |||| ||||| |||||||| ||||| || ||||| || | | ||| | || |||| || Sbjct 762 AAGATAAGACGTTGTTGATCCGGAGGAATTCCTTCCTTGTCCTGTA--TCTTCGTTTTAA 705 Query 132049 C-TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107 | | || | ||||||| ||| ||||||| || | ||| || || || || |||| Sbjct 704 CATTGTCGATCGTATCGGAACTCTCGACTTCGAGAGTTATCGTCTTCCCCGTTAGGGTTT 645 Query 132108 TTATGAAAATCTGCAT 132123 | | ||||||||||| Sbjct 644 TCACAAAAATCTGCAT 629 Score = 104 bits (114), Expect = 2e-17 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987 ||||||| ||||| |||||||||||| | |||||| || || ||||||||||||| Sbjct 1052 TTGACTCCTTTTGGATGTTGTAGTCGGCGAGGGTACGGCCGTCCTCAAGCTGTTTACCGG 993 Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047 |||| ||||| || ||||| ||||| || ||||| || || ||| ||| |||| Sbjct 992 CGAAGATGAGACGTTGCTGATCGGGAGGGATTCCTTCCTTGTCTTGAATCTTTGTCTTCA 933 Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107 | || | || || | |||||| || | ||| | ||| || || ||||| |||| Sbjct 932 CGTTGTCGATTGTGTCCGAGCTCTCCACCTCCAACGTGATCGTCTTTCCGGTCAGGGTTT 873 Query 132108 TTATGAAAATCTGCATGACT 132127 | | ||| || |||||| || Sbjct 872 TGACGAAGATTTGCATGCCT 853 >seq40887 Length=4418 Score = 95.1 bits (104), Expect = 1e-14 Identities = 140/196 (71%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTC-GCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGA 131988 || || || || ||||||||||| ||| | ||| || |||||| |||||||| |||| Sbjct 2494 GATTCCTTCTGGATGTTGTAGTCAGCT-AAGGTCCGGCCATCTTCAAGCTGTTTTCCGGC 2436 Query 131989 ATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAA 132048 |||| || || || |||||||| || || |||||||| || ||||| ||| | Sbjct 2435 GAAGATAAGTCGTTGCTGATCTGGGGGAATACCTTCTTTGTCTTGTATTTTAGCTTTGAC 2376 Query 132049 CTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 132108 | || | || |||| |||||||| | || | |||||||| || ||||| || Sbjct 2375 ATTGTCGATTGTGTCGGAGCTTTCCACTTCCAAGGTGATTGTTTTACCGGTGAGAGTCTT 2316 Query 132109 TATGAAAATCTGCATG 132124 | ||||||||||||| Sbjct 2315 GACGAAAATCTGCATG 2300 >seq161151 Length=1962 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987 ||||||| || || |||||||||||| | ||| | || |||||||| || |||| Sbjct 1303 TTGACTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCTGCCGTCCTCGAGCTGCTTTCCGG 1362 Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047 |||| ||||| ||||| ||||| || ||||| || || || || ||| ||||| Sbjct 1363 CGAAGATGAGACGTTGTTGGTCTGGTGGGATGCCCTCCTTGTCCTGGATCTTTGCTTTCA 1422 Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107 | || | || || | | ||| || || | ||| | ||| ||||| || || |||| Sbjct 1423 CATTGTCGATCGTGTCAGAGGACTCTACCTCCAACGTGATCGTCTTACCCGTTAGGGTTT 1482 Query 132108 TTATGAAAATCTGCAT 132123 | | ||| |||||||| Sbjct 1483 TCACGAAGATCTGCAT 1498 >seq90319 Length=2932 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 |||||||| | | ||||||| ||||| |||||||||||| | |||||| ||||| Sbjct 1417 ACCAAATGGAGGGTTGACTCCTTTTGGATGTTGTAGTCGGCGAGGGTACGGCCGTCTTCT 1476 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 |||||||| |||| |||| | | || |||||||| || || ||||| || || Sbjct 1477 AGCTGTTTTCCGGCGAAGATCAATCTTTGCTGATCTGGGGGGATACCTTCCTTGTCTTGG 1536 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 || || ||||| | || | || |||| || || |||| || | || || Sbjct 1537 ATCTTGGCTTTCACGTTATCGATGGTGTCGGAGCTTTCGACCTCGAGAGTGATGGTCTTT 1596 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || |||||||| | ||| || ||||| Sbjct 1597 CCGGTAAGAGTTTTGACGAATATTTGCAT 1625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471391652019600