Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq102355 93.3 4e-14 seq90319 89.7 5e-13 seq27206 87.8 2e-12 seq78250 86.0 6e-12 seq86036 84.2 2e-11 seq40887 84.2 2e-11 seq149253 82.4 7e-11 >seq102355 Length=2708 Score = 93.3 bits (102), Expect = 4e-14 Identities = 142/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| ||||| |||| || || |||| || |||||||||| | Sbjct 629 ATGCAGATTTTTGTGAAAACCCTAACGGGGAAGACGATAACTCTCGAAGTCGAGAGTTCC 688 Query 25235 GATACTATCGAGCAAGT-AAAACAAAAAATTACCG-ATAAAGAGGGTATACCGCCCGATC 25292 ||||| ||||| | || ||||| || | ||| | | || || || || || || |||| Sbjct 689 GATACGATCGACAATGTTAAAACGAAGA--TACAGGACAAGGAAGGAATTCCTCCGGATC 746 Query 25293 AGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACA 25352 | ||| | || || | || ||| ||||| |||||||| | | | | || |||||||| Sbjct 747 AACAACGTCTTATCTTCGCCGGTAAACAGCTCGAAGACGGCCGTACTCTCGCCGATTACA 806 Query 25353 ATATTCAAAAAGAATCCAC 25371 |||| ||||||||||| || Sbjct 807 ATATCCAAAAAGAATCGAC 825 >seq90319 Length=2932 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || ||||| | |||||||| | ||||| |||| |||||| | | Sbjct 1625 ATGCAAATATTCGTCAAAACTCTTACCGGAAAGACCATCACTCTCGAGGTCGAAAGCTCC 1566 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || ||||| | || ||| || || || || || ||||| || || |||||| Sbjct 1565 GACACCATCGATAACGTGAAAGCCAAGATCCAAGACAAGGAAGGTATCCCCCCAGATCAG 1506 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 |||||| | || | || ||| ||||| || ||||| | | | || ||| ||||| Sbjct 1505 CAAAGATTGATCTTCGCCGGAAAACAGCTAGAAGACGGCCGTACCCTCGCCGACTACAAC 1446 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGT 25383 || ||||| || || ||| | ||||| || Sbjct 1445 ATCCAAAAGGAGTCAACCCTCCATTTGGT 1417 >seq27206 Length=5223 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| ||||| | ||||| || | || || | |||||||| Sbjct 3285 ATGCAGATCTTTGTCAAAACCCTCACCGGCAAGACCATTACCTTGGAAGTCGAGAGTTCT 3226 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| ||||| | || ||| ||| || ||||| || || || || || |||||| Sbjct 3225 GATACAATCGACAACGTTAAAGCAAAGATCCAGGATAAGGAAGGGATCCCCCCTGATCAG 3166 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCG-ATTACAA 25353 ||||| ||||| | || ||| ||||| | ||||| | |||| | |||| ||||||| Sbjct 3165 CAAAGGCTCATATTCGCCGGGAAACAGTTGGAAGACGGCAGAACCCT-AGCGGATTACAA 3107 Query 25354 TATTCAAAAAGAATCCACCATTCAT 25378 |||||| || ||||| || ||||| Sbjct 3106 TATTCAGAAGGAATCGACTCTTCAT 3082 >seq78250 Length=3191 Score = 86.0 bits (94), Expect = 6e-12 Identities = 142/204 (70%), Gaps = 1/204 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || ||||| | ||||| ||| | || || | || ||||| Sbjct 647 ATGCAA-TCTTCGTCAAAACCCTCACCGGCAAAACCATTACCTTAGAGGTCGAGAGTTCG 705 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| ||||| | || ||| || ||| || ||||| ||||| || || |||||| Sbjct 706 GATACCATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGTATTCCTCCTGATCAG 765 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||||| ||||||| | |||||| || | || |||| |||| | || |||||| Sbjct 766 CAAAGGCTCATTTTCTCCGGCAAGCAGTTGGAGGATGGAAGAACCCTGGCGGACTACAAT 825 Query 25355 ATTCAAAAAGAATCCACCATTCAT 25378 || || || ||||||||| ||||| Sbjct 826 ATCCAGAAGGAATCCACCCTTCAT 849 >seq86036 Length=3019 Score = 84.2 bits (92), Expect = 2e-11 Identities = 140/199 (70%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| ||||| ||||||| || |||| || | |||||||| | Sbjct 1121 ATGCAGATCTTTGTGAAAACCCTAACCGGTAAGACGATTACTCTTGAAGTCGAGAGTTCC 1062 Query 25235 GATACTATCGAGCAAGT-AAAACAAAAAATTACCG-ATAAAGAGGGTATACCGCCCGATC 25292 ||||| ||||| | || ||||| || | ||| | | || || || || || || |||| Sbjct 1061 GATACGATCGACAATGTGAAAACGAAGA--TACAGGACAAGGAAGGAATCCCTCCAGATC 1004 Query 25293 AGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACA 25352 | ||| | || || | || ||| ||||| |||||||| | | | | || |||||||| Sbjct 1003 AACAACGTCTTATCTTCGCCGGTAAACAGCTCGAAGACGGCCGTACTCTCGCCGATTACA 944 Query 25353 ATATTCAAAAAGAATCCAC 25371 |||| || || ||||| || Sbjct 943 ATATACAGAAGGAATCGAC 925 >seq40887 Length=4418 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGA-AGCCAA 25233 ||||| | || ||||| || | |||||||| ||||||| |||||||||| ||| | Sbjct 1845 ATGCAGATCTTCGTAAAGACTCTCACCGGAAAGACGATCACTCTCGAAGTCGAGAGCTCA 1904 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||||| || || | || || |||||| || || || || || || || || || Sbjct 1905 -GATACCATTGACAACGTCAAGGCAAAAATCCAGGACAAGGAAGGGATTCCCCCAGACCA 1963 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||||| || || | || ||| || || || ||||| | | | | ||||||||| Sbjct 1964 ACAAAGGCTTATCTTCGCCGGAAAGCAGCTAGAAGACGGCCGCACCTTGGCCGATTACAA 2023 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || ||||| ||||| || |||| | || | ||||||||||||| Sbjct 2024 CATCCAAAAGGAATCAACTCTTCACCTCGTTCTTCGATTGAGAGGAGG 2071 >seq149253 Length=2080 Score = 82.4 bits (90), Expect = 7e-11 Identities = 106/145 (73%), Gaps = 1/145 (1%) Strand=Plus/Plus Query 25268 GATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAA 25327 || ||||| || || || || ||||| || ||| | |||| | || || ||| | ||| Sbjct 703 GACAAAGAAGGGATTCCTCCAGATCAACAGAGATTGATTTTTGCTGGAAAGCAATTAGAA 762 Query 25328 GATGATAGAAATGTCAGCGATTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTA 25387 |||| |||| || |||||||| || || ||||| || || ||||| | || || Sbjct 763 GATGGAAGAACACTCGCTGATTACAACATCCAGAAAGAGTCAACACTTCATCTTGTTCTA 822 Query 25388 AGATTGAGAGGAGGAA-AATGATCA 25411 |||||||||||||||| ||||||| Sbjct 823 AGATTGAGAGGAGGAACCATGATCA 847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 440220004315200