Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq107321 235 8e-56 seq48246 215 7e-50 seq649695 149 9e-30 >seq107321 Length=2628 Score = 235 bits (260), Expect = 8e-56 Identities = 396/565 (70%), Gaps = 11/565 (2%) Strand=Plus/Plus Query 1455753 TGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTT 1455812 ||||||| |||| |||| | ||| |||||||||||| |||||| | || || || ||| Sbjct 721 TGTTCCCAATCCAATACCCTCAGATCTGGGAAATGTACAAAAAAG-CAGAAGCTTCATTT 779 Query 1455813 TGGACCGCCGAGGAGGTCGACCTCGGCGCCG-ACACGGTCCACTGGGTGTCGCTGAGCGA 1455871 ||||| || |||||||| || | | | | | || | || |||| || ||||| Sbjct 780 TGGACGGCGGAGGAGGTTGATTT-GTCACAGGACCAGCGTCAGTGGGACAACCTAAGCGA 838 Query 1455872 CGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCG 1455931 | |||| | | ||||||| ||||||||||| || || ||||||| |||||| |||| Sbjct 839 TGGCGAGAGGTACTTCATCACTCACGTCCTCGCATTCTT-CGCCGCCTCCGATGGAATCG 897 Query 1455932 TGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGT 1455991 | || ||||| ||||| || || ||||||||||||||| | | ||||| ||| | Sbjct 898 TATTGGAAAACCTCGCCGGACGGTTCATGAAAGAGGTCCAAGTTGCGGAGGCGCGTGCCT 957 Query 1455992 TTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCG 1456051 | ||||| ||||||||||| ||||| ||||||||||| || | ||| || || ||| Sbjct 958 TCTACGGATTCCAGATCGCAATCGAGAACATCCACTCCGAGATGTACAGTCTGCTTCTCG 1017 Query 1456052 ACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGC 1456111 | | ||| |||| ||| | ||||||| || |||||||| ||||| || | | Sbjct 1018 AATCATACATCAAAGACTCCAACGAGAAGAGTAGGCTGTTTCGCGCAATCGATACCATCC 1077 Query 1456112 CGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACA 1456171 | | | ||| || || | ||||| | | |||||| | || || | Sbjct 1078 CTTGCATCCAGAAGAAAGCTAAATGGGCCCTCAGATGGATC-----GATGGATCTGAAAC 1132 Query 1456172 CTTTGCCGAGCGGCTCGTCGGCTTTGC-CGCGTCGAGGGCATCTTTTTCTCGGGCAGTTT 1456230 ||| || || ||| || ||| || || ||||||| || ||||| ||||| |||||||| Sbjct 1133 CTTCGCAGAACGGATCATCGCTTTCGCTTGCGTCGAAGGTATCTTCTTCTCCGGCAGTTT 1192 Query 1456231 CTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACG 1456290 ||||||||| || |||||||| || || || || ||||| || || | | | |||| Sbjct 1193 CTGCGCCATATTCTGGCTCAAAAAACGAGGGCTTATGCCAGGGCTAACATTCTCG-AACG 1251 Query 1456291 AATTTATCAGTCGCGACGAAGTTTT 1456315 |||| ||| || ||||| | ||| Sbjct 1252 AATTGATCTCGCGAGACGAGGGTTT 1276 >seq48246 Length=4099 Score = 215 bits (238), Expect = 7e-50 Identities = 404/580 (70%), Gaps = 23/580 (4%) Strand=Plus/Minus Query 1455734 AACCCGAACCGCTT-TGTCCTGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCA 1455792 ||||| | ||||| ||| ||||||| || | |||| | || |||||||||||| | Sbjct 2169 AACCCAGATCGCTTCTGTA-TGTTCCCAATTCAGTACCCTCAAATTTGGGAAATGTACAA 2111 Query 1455793 AAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGA-CACGGTC 1455851 |||| |||| || || |||||||| ||||| |||||||| | | || || ||| Sbjct 2110 GAAAG-CCGAAGCTTCGTTTTGGACAGCCGAAGAGGTCGATTTGTCTGAAGATCAACGTC 2052 Query 1455852 CACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTT 1455911 |||||| ||| ||| |||| |||| | || || |||| |||||||| ||||| || Sbjct 2051 -ACTGGGACTCGTTGACAGACGGCGAGAGGCACTTTATCACTCACGTCCTTGCCTTCTT- 1994 Query 1455912 CGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCA 1455971 ||||||| |||||||||||| || ||||| ||||| || || ||||||||||| || Sbjct 1993 CGCCGCCTCCGATGGCATCGTTTTGGAAAACCTAGCCGGACGATTCATGAAAGAGGTTCA 1934 Query 1455972 ATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGA 1456031 | | | ||||| ||| || ||||| |||||||| |||||||| || |||||||| || Sbjct 1933 AGTTGCGGAGGCGCGTGCCTTCTACGGATTCCAGATTGCCATCGAGAATATCCACTCCGA 1874 Query 1456032 AACCTAC---TCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCT 1456088 | ||| | ||| ||| || ||||| | |||||| | ||||| | || Sbjct 1873 GATGTACAGTTTGCTTCTG---GAATCCTACATAAAGGACTCTAATGAGAAAAGCAGACT 1817 Query 1456089 CTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTG 1456148 ||| || || ||||| || | |||| || ||| || || | ||||| | || || Sbjct 1816 CTTCCGAGCAATCGAGACTATTCCGTGTGTTGAGAAGAAAGCGAATTGGGCTCTCAAATG 1757 Query 1456149 GATCAACAAGGAGGGCCTCGACAC-TTTGCCGAGCGGCTCGTCGGCTTTGC-CGCGTCGA 1456206 |||| || ||| || || ||||| ||||| | ||| || || |||| || Sbjct 1756 GATC------GATGGCTCGGAGACGTTTGCAGAGCGTATTATCGCTTTCGCTTGCGTTGA 1703 Query 1456207 GGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCAT 1456266 || || || || || || || |||||||| || |||||| | ||||| || || | || Sbjct 1702 AGGGATTTTCTTTTCCGGAAGCTTCTGCGCGATTTTTTGGTTGAAGAAACGTGGGTTGAT 1643 Query 1456267 GCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCGCGA 1456306 ||| || || ||| |||||||| ||| |||||| Sbjct 1642 GCCTGG-ATTAACCTTCTCGAACGAATTAATC--TCGCGA 1606 >seq649695 Length=433 Score = 149 bits (164), Expect = 9e-30 Identities = 173/232 (75%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 || ||||| ||||| || || || |||||| |||| | ||| |||| |||| || Sbjct 251 ATTTACAAAGTGCTGAAACAAGTCCACCCCGACACCGGT-----ATC-TCCAGCAAGGCC 198 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| |||||||||||||| || |||||||| |||| | |||| | |||||||| | Sbjct 197 ATGTCCATCATGAACTCGTTCGTGAACGACATCTTCGAGAGGATCGCCGCCGAGGCCAGC 138 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || || || | || ||||||| | ||| ||| | | || |||||||||||||| || Sbjct 137 CGTCTTGCCCACTACAACAAGAGGTCCACCATCACCTCTCGGGAGATCCAGACCGCTGTC 78 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || || || ||| ||| ||| |||||| |||||| || || || ||||||| Sbjct 77 CGTCTCCTCCTGCCCGGAGAATTGGCCAAGCACGCTGTGTCTGAAGGCACCA 26 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7093308780209820