Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq48246 183 4e-41 seq6274 163 4e-35 seq107321 159 5e-34 seq23164 140 4e-28 >seq48246 Length=4099 Score = 183 bits (202), Expect = 4e-41 Identities = 590/904 (65%), Gaps = 20/904 (2%) Strand=Plus/Plus Query 39325 TTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 39384 ||| || || |||||||| | ||||||||| ||||| || || || | || || || Sbjct 1285 TTTCTGATACTCACCAACCCTTTTCTCGAAGAAATTGGTCTTCCCCTGTAACGAAATCAG 1344 Query 39385 TTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAAT 39444 |||||| |||||||||| || ||||| || ||| | |||| ||| | | Sbjct 1345 TTCCATCCAATCAAACGGGTTCTGGGCATTGTACAATTTCCCATATCCCAATGCACCCAA 1404 Query 39445 CAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAG 39504 || ||||| ||||| ||||| |||||| |||||| || | ||||| |||| || Sbjct 1405 TAACCTATCAGCAACGAATTCGATGTATTCACTCATCAGATCCCCGTTCATCCCTACAAG 1464 Query 39505 TTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTAT 39564 | |||| || || | |||||| |||| || || || || || | | || Sbjct 1465 AGCACAAGGTAAGGCATCGCAGACGAACTCTCTTTCAATCTCCACCGCATCGGAGACGAT 1524 Query 39565 CGATGTTACTACCTCATCACTCGGT---GGATGCAATAAATGTTTAAACATTAAGCAGGC 39621 | ||| || |||||| | | | || ||| | || || | || || Sbjct 1525 TCCCTTGACTCGTTCCTCACTCAGCTTCGTCTTCAGTAACCCATAAAGCA---AACACGC 1581 Query 39622 GAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGG 39681 || ||||| |||| |||||||||| ||||||||||| || || || | |||||| Sbjct 1582 AAAATCACAGTGTAATCCCTCATCTCGCGAGATTAATTCGTTCGAGAAGGTTAATCCAGG 1641 Query 39682 CATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT-CCAGAAAAGAAGATGC 39740 ||| | ||||| || || | |||||| || || ||| ||| | || |||||||| || | Sbjct 1642 CATCAACCCACGTTTCTTCAACCAAAAAATCGC-GCAGAAGCTTCCGGAAAAGAAAATCC 1700 Query 39741 CTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATT-ATGTATCCAC 39799 |||| || || || || | || | |||| | ||| | | | || ||||| Sbjct 1701 CTTCAACGCAAGCGAAAGCGATAATACGCTCTGCA-AACGTCTCCGAGCCATCGATCCAT 1759 Query 39800 TTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGA 39859 || | ||||||| |||||||||| ||||| || || || || || || ||||| Sbjct 1760 TTGAGAGCCCAATTCGCTTTCTTCTCAACACACGGAATAGTCTCGATTGCTCGGAAGAGT 1819 Query 39860 TAATGTTTTTCATCACTA---TCTTTAACATATGTATCTATTAACAGACTATACATTTCT 39916 || ||||| ||| || || || | || | || | | || ||| ||||| || Sbjct 1820 C--TGCTTTTC-TCATTAGAGTCCTTTATGTAGGATTCCAGAAGCAAACTGTACATCTCG 1876 Query 39917 GAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGT 39976 || ||||| || || || || ||||| |||||||| || | || || | || ||| Sbjct 1877 GAGTGGATATTCTCGATGGCAATCTGGAATCCGTAGAAGGCACGCGCCTCCGCAACTTGA 1936 Query 39977 ACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAA 40036 |||||| |||| | | || | ||||| || || ||||| ||||| || Sbjct 1937 ACCTCTTTCATGAATCGTCCGGCTAGGTTTTCCAAAACGATGCCATCGGAGGCGGCGAAG 1996 Query 40037 AATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCA--T 40094 || || | || || | ||||| | | || || |||||| | ||||| | | Sbjct 1997 AAGGCAAGGACGTGAGTGATAAAGTGCCTCTCGCCGTCTGTCAACGAGTCCCAGTGACGT 2056 Query 40095 TGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGT 40154 |||| ||| || | ||| || ||||| |||||||||||||| || || || || |||| Sbjct 2057 TGAT--CTTCAGACAAATCGACCTCTTCGGCTGTCCAAAACGAAGCTTCGGCTTTCTTGT 2114 Query 40155 ACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAATCTATTTGGATTTTTTG 40214 |||| | ||| || | | | || || ||||| || ||| || | || ||| ||| | Sbjct 2115 ACATTTCCCAAATTTGAGGGTACTGAATTGGGAACATACAGAAGCGATCTGGGTTTGGAG 2174 Query 40215 CAAG 40218 |||| Sbjct 2175 CAAG 2178 >seq6274 Length=8207 Score = 163 bits (180), Expect = 4e-35 Identities = 218/303 (72%), Gaps = 0/303 (0%) Strand=Plus/Plus Query 69670 ttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCC 69729 ||||| | | ||| |||||||| | ||||||| |||||||||||| | ||| | || Sbjct 4814 TTTTTCCTCAAATCAAGAAACTCAAAGATATCAGCATGCCATGGTTCCAAATAAACAGCA 4873 Query 69730 ATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACT 69789 | | ||| || |||| ||||| || || | |||| ||||||| |||| | || Sbjct 4874 AATGCACCCTTTCTTTTACCACCTCCTTGGTCAACATATCGAGCAGTGTCATTAAACACA 4933 Query 69790 CTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTT 69849 | || ||| |||||||||||||||||| | |||||||| ||| || |||||||| || Sbjct 4934 CGCAACATTGGAATAATACCATTAGATGTTCCATTTGTGCCACGTATGTAACTTCCAGTT 4993 Query 69850 GCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAA 69909 || | |||||| | ||| | ||| || || ||||| ||| ||| | |||||| Sbjct 4994 GCTCTGATATTATGCACAGAGACACCAATACCCCCTGCTGATTTGCTGATAACAGCACAT 5053 Query 69910 CGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAG 69969 ||| || || ||||| || || || |||||||||||| ||||| | || |||||| Sbjct 5054 TCTTTTAAAGTATCATAGATGCCTTCAATGCTATCATCTTTCATGCATATCAGGAAACAG 5113 Query 69970 CTA 69972 ||| Sbjct 5114 CTA 5116 >seq107321 Length=2628 Score = 159 bits (176), Expect = 5e-34 Identities = 578/898 (64%), Gaps = 10/898 (1%) Strand=Plus/Minus Query 39326 TTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 39385 || |||||||| || || | |||||||| ||||| || || || | |||||| || | Sbjct 1585 TTCTGGTATTCGCCGACCCTCTTCTCGAAGAAATTGGTCTTACCCTGCAATGAAATCAGT 1526 Query 39386 TCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAATC 39445 ||||| ||||||| || || |||| || | || |||| || | |||| Sbjct 1525 TCCATCCAATCAAATGGGTTCTGAACATTGTACATCTTCCCGTATCCCAAAGCACCAATC 1466 Query 39446 AATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGT 39505 |||| |||||| ||||| || || ||||| |||| | || ||||| || | | Sbjct 1465 AATCGATCTGCTACAAACTCGATATATGTGCTCATAAGATCGGCGTTCATCCCCACCAAC 1406 Query 39506 TTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATC 39565 | || | || || | || || | || || ||||| || || | | || Sbjct 1405 CCACACGGCAATGCTTCACAGACGAATTCCCTCTCAATCTCTACAGCATCAGCCACGATT 1346 Query 39566 GATGTTACTACCTCATCACTCGG-TGGATGCAATAAATGTTTAAACATTAAGCAGGCGAA 39624 | | ||| ||| |||||| | | || | | | | || | ||||| ||||| Sbjct 1345 GCCTTCACTCGCTCTTCACTCAGCTTCATCTTCAACAGGCTGTAA-AGCAAGCACGCGAA 1287 Query 39625 GTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCAT 39684 |||||| || | ||||| |||| || |||||||| || ||||| || || ||||| Sbjct 1286 GTCACAGTGCAAACCCTCGTCTCGCGAGATCAATTCGTTCGAGAATGTTAGCCCTGGCAT 1227 Query 39685 TAGACCACGCTTTTTGAGCCAAAATATGGCAGCA-AAAGATCCAGAAAAGAAGATGCCTT 39743 || || || ||||||||||| |||||||| ||| ||| || || |||||||| |||| Sbjct 1226 AAGCCCTCGTTTTTTGAGCCAGAATATGGC-GCAGAAACTGCCGGAGAAGAAGATACCTT 1168 Query 39744 CTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTATGTATCCACTTCT 39803 | || || || || | | | ||| || | || | || ||||| | Sbjct 1167 CGACGCAAGCGAAAGCGATGATCCGTTCTGCGAAGGTTTCAGATCCATCGATCCATCTGA 1108 Query 39804 GTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATAAT 39863 | ||||| | ||||||||||| | ||||| || || || || || ||| || | Sbjct 1107 GGGCCCATTTAGCTTTCTTCTGGATGCAAGGGATGGTATCGATTGCGCGAAACAGCCTAC 1048 Query 39864 GTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGA 39923 || || | ||||| | |||| || | | |||||| ||||| || || |||| Sbjct 1047 TCTTCTCGTTGGAGTCTTTGATGTATGATTCGAGAAGCAGACTGTACATCTCGGAGTGGA 988 Query 39924 TGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTG 39983 |||| || || || ||||| |||||||| || | || || | || ||| |||||| Sbjct 987 TGTTCTCGATTGCGATCTGGAATCCGTAGAAGGCACGCGCCTCCGCAACTTGGACCTCTT 928 Query 39984 AACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCA 40043 || | | | || | ||||| || |||||||| ||||| || ||||| | Sbjct 927 TCATGAACCGTCCGGCGAGGTTTTCCAATACGATTCCATCGGAGGCGGCGAAGAATGCGA 868 Query 40044 ATACATGTTTAATAAAATATTTTT---CATCGGGTGTCAATTTATTCCAGTCATTGATAT 40100 || || | || || || | | ||||| | | || | ||| | | | Sbjct 867 GGACGTGAGTGATGAAGTACCTCTCGCCATCG---CTTAGGTTGTCCCACTGACGCTGGT 811 Query 40101 CTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGT 40160 | | ||| | ||| || || || || |||||||| || || ||||| ||||||||||| | Sbjct 810 CCTGTGACAAATCAACCTCCTCCGCCGTCCAAAATGAAGCTTCTGCTTTTTTGTACATTT 751 Query 40161 TCCATATATCACGATATTGTATTGGAAAAATAACAAATCTATTTGGATTTTTTGCAAG 40218 ||| || | | | ||||| ||||| || ||| ||||||| ||| ||| ||||| Sbjct 750 CCCAGATCTGAGGGTATTGGATTGGGAACATACAGAATCTATCTGGGTTTGGAGCAAG 693 >seq23164 Length=5532 Score = 140 bits (154), Expect = 4e-28 Identities = 164/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 ||||| || || | || | |||||| | |||| | || | || ||| |||| ||||||| Sbjct 1868 CCTCCTTGGTCAACATAACGGGCAGTATCATTAAACACACGCAACATTGGAACAATACCA 1809 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870 || ||| | |||||||||||| || || ||||| |||| ||||||||| |||||| Sbjct 1808 TTTGATGTTCCATTTGTTCCACGTATGTAGCTTCCAGTTGCACGAATATTATGAATAGAC 1749 Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 | || ||||||||||| ||| || | |||||| || ||||||||||||||| Sbjct 1748 ACTCCAATTCCTCCTGCTTGTTTGCTAATAATAGCACATTCCTTTAATGTGTCATATATA 1689 Query 69931 CCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 | || ||||| |||||| ||||| || | ||||||||| Sbjct 1688 GCTTCAATGCTGTCATCTTTCATGCAAATCAAGAAACAGCTA 1647 Score = 89.7 bits (98), Expect = 7e-13 Identities = 107/144 (74%), Gaps = 1/144 (1%) Strand=Plus/Minus Query 69492 TTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGG 69551 |||||||||||| || ||||| ||| || || | |||||| |||| |||| ||||| Sbjct 2270 TTTTTCATATTGGGTGTATAGTTTTTCAAAATCTTGACCCCAACAATCAGCCAAACCAGG 2211 Query 69552 ACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAG 69611 | ||||||||||| | || ||||| | ||| | || |||| || |||||| || Sbjct 2210 AGCCTCATTTGGACAGAATAAAGACCAATCTCCATTACTCTGGACTCTTTCCATAAAAAG 2151 Query 69612 ATCGGGAATCCAAAGAGCTATAAA 69635 ||| || |||||||| || ||||| Sbjct 2150 ATCAGGTATCCAAAGTGC-ATAAA 2128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 679386204140400