Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_027331.1 Length=170341 Score E Sequences producing significant alignments: (Bits) Value seq159469 163 3e-35 >seq159469 Length=1977 Score = 163 bits (180), Expect = 3e-35 Identities = 307/445 (69%), Gaps = 16/445 (4%) Strand=Plus/Plus Query 143127 TTGATTTGAAGACCATAGTCCAGGTGACGAATTCGGTTTTCATCTACGCCTTTGTTGTTC 143186 || |||||||| | || || | ||||| | || ||||| || | ||| | || || Sbjct 1292 TTAATTTGAAGTGCGTAATCAATATGACGCACTCTATTTTCTTCAATTCCTCTATTATTT 1351 Query 143187 TTAAGTACGAGGAGATTCTCGACTTCAAGATGCCAAATTGGATAGTACAATGTTGCGGCA 143246 || | || | | | | || ||||||| |||||| |||||||| | | ||||| || Sbjct 1352 TTTAAAACTAATAAACTTTCAACTTCAAAATGCCATATTGGATAAAAAATAGTTGCAGCT 1411 Query 143247 CCACCACGAACTCCGCCTTGGGAACAGGATTTAACTGCAGTTTGGAAGTGTTTCCAGAAA 143306 || || | ||||||||||| ||||||||||| || ||| |||| |||||||| | ||| Sbjct 1412 CCTCCTCTCACTCCGCCTTGTGAACAGGATTTTACGGCACTTTGAAAGTGTTTATAAAAA 1471 Query 143307 GGAATAACTCCAGTATGCTTGACTTCACCGTTTCCGATTTTTGAACCTTCT---GCACGC 143363 || ||| |||||||| |||||||||||| | | | || | || || || Sbjct 1472 GGTATACAACCAGTATGAAATGCTTCACCGTTTC---TAATAGGACTTCCTAACGCGCGA 1528 Query 143364 AACATCCCCGCGTTAATGCCAATACCTGCACGCT----TACTGATATACTCAATAATGCT 143419 | ||||| ||||| || || || ||||| | ||| || || ||||| ||| Sbjct 1529 ATTTGTCCCGCATTAATACCGATTCCAGCACGTTGTGATACATATTTA-ACAATAGAGCT 1587 Query 143420 TGCACTGGCTTTGTTAATTGA-CTTAAGTGAGTCACCAGCTTCAATAACAACACAAGAGC 143478 | | | || ||||| || |||| | | ||| || ||| || | ||||||||| | Sbjct 1588 AGTAGTAGC---ATTAATAGAGTTTAAATTA-TCAGCACATTCGATTAAAACACAAGAAC 1643 Query 143479 TAAACTGACGAGTCGGTGTACGAGCCCCGGCCATAATTGGAGTAGGCAAAGAAATTTGAC 143538 ||||||||||||| || || || | || | |||||| || || || || ||||||| | Sbjct 1644 TAAACTGACGAGTAGGAGTTCGTACTCCAGACATAATGGGTGTTGGTAATGAAATTTTAA 1703 Query 143539 GAGTAGATACGGCGTCATAAAAACG 143563 |||||| | || | ||||||||| Sbjct 1704 AAGTAGAAATTGCATTATAAAAACG 1728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 538995103635600