Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_027344.1 Length=158099 Score E Sequences producing significant alignments: (Bits) Value seq30067 217 1e-51 seq159469 210 2e-49 seq408088 118 1e-21 >seq30067 Length=5021 Score = 217 bits (240), Expect = 1e-51 Identities = 321/455 (71%), Gaps = 0/455 (0%) Strand=Plus/Minus Query 14834 CATCAAATCATTGATTTGCAGACCGTAATCTAGATGACGAATGCGGTTTTCATCTACACC 14893 ||| || | ||| ||||| | | || || | |||||| | | ||||| || | || Sbjct 3727 CATGAATTTATTAATTTGAATTGCATAGTCGACATGACGTACTCTATTTTCTTCAATTCC 3668 Query 14894 TTTGTTGTTCTTTAATACCAAAAGGTTTTCAACCTCAAGATGCCACATTGGATAATAAAG 14953 ||||||| ||||| || || | |||||||| |||| |||||| ||||||||| ||| Sbjct 3667 CCTGTTGTTTTTTAAAACTAATAAATTTTCAACTTCAAAATGCCATATTGGATAAAAAAT 3608 Query 14954 AGTAGCTGCACCACCACGGACACCGCCTTGAGAACAAGATTTTACTGCAGTCTGAAAATG 15013 ||| || || ||||| | ||||| |||||||||||||||||||| || | |||||||| Sbjct 3607 AGTTGCAGCTCCACCTCTAACACCTCCTTGAGAACAAGATTTTACAGCGCTTTGAAAATG 3548 Query 15014 TTTCCAGAAAGGAATTACGCCAGTATGTTTTACTTCGCCATTACCAATTTTTGAGCCTTC 15073 ||| | ||||| || |||||||| | |||| || || | ||| ||| Sbjct 3547 TTTATAAAAAGGTATACAACCAGTATGAAATGCTTCTCCGTTTCTAATAGGACTTCCTAA 3488 Query 15074 AGCTCGAATCATACCGGCGTTGATGCCTATACCAGCTCGCTTGCTGATATACTTAATAAT 15133 || ||||| || || || || || || ||||| || | | | ||| |||| ||| Sbjct 3487 TGCGCGAATTTGTCCTGCATTAATACCAATTCCAGCACGTTGGGAAACATATTTAACAAT 3428 Query 15134 ACTGTTACTTGCTGCATTAATAGAATTCAGTGAATCGCCAGCTTCAATAACTACACAAGA 15193 | | || ||| |||||||| ||||| | ||| || |||||| | |||||||| Sbjct 3427 AGAGCTAGTTGTCGCATTAATGGAATTTAAATTATCAGCACATTCAATTAAAACACAAGA 3368 Query 15194 ACTAAACTGACGAGTAGGAGTACGAGCCCCTGCCATAATCGGTGTAGGCAATGAAATCTG 15253 |||||| |||||||||||||| | | || | |||||| ||||| || |||||||| | Sbjct 3367 ACTAAATTGACGAGTAGGAGTTCTGACTCCAGACATAATTGGTGTTGGTAATGAAATTTT 3308 Query 15254 TCGAGTAGATACAGCGTCATAAAAGCGAATAATAT 15288 |||||| | ||| | ||||| ||| ||||| Sbjct 3307 AAAAGTAGAAATAGCATTGTAAAAACGATGAATAT 3273 >seq159469 Length=1977 Score = 210 bits (232), Expect = 2e-49 Identities = 323/457 (71%), Gaps = 4/457 (1%) Strand=Plus/Plus Query 14834 CATCAAATCATTGATTTGCAGACCGTAATCTAGATGACGAATGCGGTTTTCATCTACACC 14893 ||| || | ||| ||||| || ||||||| | |||||| | | ||||| || | || Sbjct 1282 CATTAATTTATTAATTTGAAGTGCGTAATCAATATGACGCACTCTATTTTCTTCAATTCC 1341 Query 14894 TTTGTTGTTCTTTAATACCAAAAGGTTTTCAACCTCAAGATGCCACATTGGATAATAAAG 14953 | | || || ||||| || || | ||||||| |||| |||||| ||||||||| ||| Sbjct 1342 TCTATTATTTTTTAAAACTAATAAACTTTCAACTTCAAAATGCCATATTGGATAAAAAAT 1401 Query 14954 AGTAGCTGCACCACCACGGACACCGCCTTGAGAACAAGATTTTACTGCAGTCTGAAAATG 15013 ||| || || || || | || |||||||| ||||| |||||||| ||| | ||||| || Sbjct 1402 AGTTGCAGCTCCTCCTCTCACTCCGCCTTGTGAACAGGATTTTACGGCACTTTGAAAGTG 1461 Query 15014 TTTCCAGAAAGGAATTACGCCAGTATGTTTTACTTCGCCATTACCAATTTTTGAGCCTTC 15073 ||| | ||||| || |||||||| | |||| || || | ||| ||| Sbjct 1462 TTTATAAAAAGGTATACAACCAGTATGAAATGCTTCACCGTTTCTAATAGGACTTCCTAA 1521 Query 15074 AGCTCGAATCATACCGGCGTTGATGCCTATACCAGCTCGCTTGCTGATA--TACTTAATA 15131 || ||||| || || || || || || ||||| || ||| ||||| || |||| | Sbjct 1522 CGCGCGAATTTGTCCCGCATTAATACCGATTCCAGCACG-TTG-TGATACATATTTAACA 1579 Query 15132 ATACTGTTACTTGCTGCATTAATAGAATTCAGTGAATCGCCAGCTTCAATAACTACACAA 15191 ||| | || | | ||||||||||| || | ||| || ||| || | |||||| Sbjct 1580 ATAGAGCTAGTAGTAGCATTAATAGAGTTTAAATTATCAGCACATTCGATTAAAACACAA 1639 Query 15192 GAACTAAACTGACGAGTAGGAGTACGAGCCCCTGCCATAATCGGTGTAGGCAATGAAATC 15251 ||||||||||||||||||||||| || | || | |||||| ||||| || |||||||| Sbjct 1640 GAACTAAACTGACGAGTAGGAGTTCGTACTCCAGACATAATGGGTGTTGGTAATGAAATT 1699 Query 15252 TGTCGAGTAGATACAGCGTCATAAAAGCGAATAATAT 15288 | |||||| | || | |||||| || |||||| Sbjct 1700 TTAAAAGTAGAAATTGCATTATAAAAACGCTTAATAT 1736 >seq408088 Length=780 Score = 118 bits (130), Expect = 1e-21 Identities = 77/85 (91%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 103767 TTGGTGGCCCCTGCTGGACTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTCTAAC 103826 ||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||| || Sbjct 697 TTGATGGCCCTTGCTGGATTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTCTTAC 638 Query 103827 CACTGAGCTAAGGGGCCGTAATTCT 103851 ||||||||||| ||||| | |||| Sbjct 637 CACTGAGCTAAAGGGCCATTTTTCT 613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500249717180400