Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_027349.1 Length=166977 Score E Sequences producing significant alignments: (Bits) Value seq159469 228 9e-55 seq30067 208 8e-49 >seq159469 Length=1977 Score = 228 bits (252), Expect = 9e-55 Identities = 311/433 (72%), Gaps = 6/433 (1%) Strand=Plus/Plus Query 139556 TAATCCATATGACGGATACGGTTTTCTTCTACGCCTTTGTTATTTTTCAAAACGAGAAGA 139615 ||||| |||||||| | | |||||||| | ||| | |||||||| ||||| | | | Sbjct 1307 TAATCAATATGACGCACTCTATTTTCTTCAATTCCTCTATTATTTTTTAAAACTAATAAA 1366 Query 139616 TTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCGCCGCCACGAATTCCG 139675 |||||||||| |||||||| || |||||| || ||| ||||| || || | | |||| Sbjct 1367 CTTTCAACTTCAAAATGCCATATTGGATAAAAAATAGTTGCAGCTCCTCCTCTCACTCCG 1426 Query 139676 CCCTGTGAACACGATTTAACAGCAGTCTGAAAATGTTTCCAAAAAGGAATAACACCAGTA 139735 || |||||||| ||||| || ||| | ||||| ||||| ||||||| ||| ||||||| Sbjct 1427 CCTTGTGAACAGGATTTTACGGCACTTTGAAAGTGTTTATAAAAAGGTATACAACCAGTA 1486 Query 139736 TGACGCACTTCACCTGTGCCAATCTTAGAACCTTCGGCACGAATCATACCAACGTTAATA 139795 ||| ||||||| | | ||| | ||| || ||||| || | |||||| Sbjct 1487 TGAAATGCTTCACCGTTTCTAATAGGACTTCCTAACGCGCGAATTTGTCCCGCATTAATA 1546 Query 139796 CCAATTCCAGCGCGTTTGGAGATATATTCAACAATTGA---AGCAGAAGCCTTATTGATA 139852 || |||||||| |||| || | ||||| |||||| || || || ||| ||| ||| Sbjct 1547 CCGATTCCAGCACGTTGTGATACATATTTAACAATAGAGCTAGTAGTAGCATTA---ATA 1603 Query 139853 GACTTCAGCGAATCACCTGCCTCAATAACAACACATGAACTAAACTGCCGAGTTGGAGTA 139912 || || | |||| | || || | |||||| ||||||||||| ||||| ||||| Sbjct 1604 GAGTTTAAATTATCAGCACATTCGATTAAAACACAAGAACTAAACTGACGAGTAGGAGTT 1663 Query 139913 CGACAACCAGCCATAATAGGAGTTGGCAATGAAATCTGTCGAGTAGATACTGCTTCATAA 139972 || |||| |||||| || ||||| |||||||| | |||||| | ||| | |||| Sbjct 1664 CGTACTCCAGACATAATGGGTGTTGGTAATGAAATTTTAAAAGTAGAAATTGCATTATAA 1723 Query 139973 AAACGAATAACAT 139985 ||||| ||| || Sbjct 1724 AAACGCTTAATAT 1736 >seq30067 Length=5021 Score = 208 bits (230), Expect = 8e-49 Identities = 313/442 (71%), Gaps = 2/442 (0%) Strand=Plus/Minus Query 139554 CATAATCCATATGACGGATACGGTTTTCTTCTACGCCTTTGTTATTTTTCAAAACGAGAA 139613 |||| || | |||||| | | |||||||| | || |||| ||||| ||||| | | Sbjct 3704 CATAGTCGACATGACGTACTCTATTTTCTTCAATTCCCCTGTTGTTTTTTAAAACTAATA 3645 Query 139614 GATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCGCCGCCACGAATTC 139673 |||||||||||| |||||||| || |||||| || ||| ||||| || || | || | Sbjct 3644 AATTTTCAACTTCAAAATGCCATATTGGATAAAAAATAGTTGCAGCTCCACCTCTAACAC 3585 Query 139674 CGCCCTGTGAACACGATTTAACAGCAGTCTGAAAATGTTTCCAAAAAGGAATAACACCAG 139733 | || || ||||| ||||| ||||| | ||||||||||| ||||||| ||| ||||| Sbjct 3584 CTCCTTGAGAACAAGATTTTACAGCGCTTTGAAAATGTTTATAAAAAGGTATACAACCAG 3525 Query 139734 TATGACGCACTTCACCTGTGCCAATCTTAGAACCTTCGGCACGAATCATACCAACGTTAA 139793 ||||| |||| || | | ||| | ||| || ||||| || | |||| Sbjct 3524 TATGAAATGCTTCTCCGTTTCTAATAGGACTTCCTAATGCGCGAATTTGTCCTGCATTAA 3465 Query 139794 TACCAATTCCAGCGCGTTTGGAGATATATTCAACAATTGAAGCAGAAGCCTTATTGATAG 139853 ||||||||||||| |||| ||| | ||||| |||||| || || | | ||| || | Sbjct 3464 TACCAATTCCAGCACGTTGGGAAACATATTTAACAATAGAGCTAGTTGTCGCATTAATGG 3405 Query 139854 ACTTCAGCGAATCACCTGCCTCAATAACAACACATGAACTAAACTGCCGAGTTGGAGTAC 139913 | || | |||| | ||||| | |||||| |||||||| || ||||| ||||| | Sbjct 3404 AATTTAAATTATCAGCACATTCAATTAAAACACAAGAACTAAATTGACGAGTAGGAGTTC 3345 Query 139914 -GACAACCAGCCATAATAGGAGTTGGCAATGAAATCTGTCGAGTAGATACTGCTTCATAA 139972 ||| |||| |||||| || ||||| |||||||| | |||||| | || | ||| Sbjct 3344 TGAC-TCCAGACATAATTGGTGTTGGTAATGAAATTTTAAAAGTAGAAATAGCATTGTAA 3286 Query 139973 AAACGAATAACATGTTTTAATC 139994 |||||| || || |||| || Sbjct 3285 AAACGATGAATATAATTTATTC 3264 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 528348192997200