Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_027364.1 Length=348113 Score E Sequences producing significant alignments: (Bits) Value seq159469 100 6e-16 seq729885 91.5 3e-13 >seq159469 Length=1977 Score = 100 bits (110), Expect = 6e-16 Identities = 193/285 (68%), Gaps = 0/285 (0%) Strand=Plus/Plus Query 259890 TTCGTATTTTTTATATAACTTTTCAAATTCTTTTTGATCAGAGCAGAATGCTTCATATAG 259949 ||| |||| |||| | | |||||||| ||||||||| || | ||| |||| ||||| Sbjct 1162 TTCATATTGAATATACATTTCTTCAAATTTTTTTTGATCTGAAAAAAATACTTCGTATAG 1221 Query 259950 CCCAGGGACTTCATTAGGACTAAAGAATGTAATATTCTTTCCATCAACCAAACGTTGATA 260009 |||| || ||| ||||||||| ||||| || | | ||| | || | |||||| Sbjct 1222 TTCAGGAACATCAGAAGGACTAAATAATGTTATTATATCTCCTGATAACATTCTTTGATA 1281 Query 260010 CAAAGTTTTGTTTACTTGGAAACAATAGTCCAGTTGACGCACACGGTTAAACTCAGTACC 260069 || ||| || | ||| | || || | |||||||| | || ||| | || Sbjct 1282 CATTAATTTATTAATTTGAAGTGCGTAATCAATATGACGCACTCTATTTTCTTCAATTCC 1341 Query 260070 TTTGTTATTTTTAAGGACTACCAAGTTATCAAATTCCAAATGCCACAATGGGAAGTGAAC 260129 | | |||||||| | |||| || | |||| ||| |||||||| | ||| | || Sbjct 1342 TCTATTATTTTTTAAAACTAATAAACTTTCAACTTCAAAATGCCATATTGGATAAAAAAT 1401 Query 260130 AGTTGCTGCACCACCACGAACACCACCTTGTGAACAGCTTTTAAC 260174 |||||| || || || | || || |||||||||||| ||| || Sbjct 1402 AGTTGCAGCTCCTCCTCTCACTCCGCCTTGTGAACAGGATTTTAC 1446 >seq729885 Length=374 Score = 91.5 bits (100), Expect = 3e-13 Identities = 121/168 (72%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 260787 TAGTCTTCCAGCAACATATTGGTAATTAGGTGTATCTTCTGAAATAAGTTCTGCTGCTGC 260846 ||||||| |||| | |||||| |||| ||||| |||| ||||| | || || ||||| Sbjct 69 TAGTCTTGCAGCCATATATTGATAATCTGGTGTTTCTTGAGAAATTAAATCAGCGGCTGC 128 Query 260847 TTTAATAAGAATATCATGAATAGTACTAGTTTCAATACCTTCATAAAACTGAAGCTGTGC 260906 |||||||| | | |||||||| | |||| |||| | ||||||||||| | ||| Sbjct 129 TTTAATAATAGTTTCATGAATGTTTATAGTAGTAATATTATTATAAAACTGAATCCGTGA 188 Query 260907 TCGGATTTCAATTTCAGAAACTGAAATACCACTTAAACCTTCAGCAGC 260954 | | ||||| || ||||| || | | || || ||||| ||||| Sbjct 189 GCATAATTCAACTTGGGAAACAGATACATCATCTAGTCCTTCTGCAGC 236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1101327476243280