Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_027399.1 Length=346602 Score E Sequences producing significant alignments: (Bits) Value seq30067 159 8e-34 seq159469 156 9e-33 seq77790 84.2 5e-11 >seq30067 Length=5021 Score = 159 bits (176), Expect = 8e-34 Identities = 389/582 (67%), Gaps = 8/582 (1%) Strand=Plus/Plus Query 128576 TTGGTGTTAATATGGGACGTATTCGTGCAATTGATTCTGCAATTCGTGATGGCGATGCAG 128635 ||||| ||||| |||| ||||| ||| | | | | ||| | | || || ||| Sbjct 3459 TTGGTATTAATGCAGGACAAATTCGCGCATTAGGAAGTCCTATTAGAAACGGAGAAGCAT 3518 Query 128636 TACATACTGGT-GTAGTACCATTCTTATCTGCATTAGCAAAAA-CTGTCAAAAGCTGTTC 128693 | ||||||||| ||| |||| || |||| |||| |||| |||| ||| ||||| Sbjct 3519 TTCATACTGGTTGTA-TACCTTT-TTATAAACATTTTCAAAGCGCTGTAAAATCTTGTTC 3576 Query 128694 CCAGGGAGGTGTAAGAGGCGGGGCAGCAACCGTACATTTTCCAATGTGGCATTTGGAATT 128753 || |||||||| ||||| || || ||||| | || |||||| |||||||| ||| | Sbjct 3577 TCAAGGAGGTGTTAGAGGTGGAGCTGCAACTATTTTTTATCCAATATGGCATTTTGAAGT 3636 Query 128754 TGAAAATATTGTAGTACTGAAAAATAATAAAGGAACTGAATTTAACCGAGTAAGACAACT 128813 ||||||| | |||| | ||||| || | |||| |||| || ||||| | || | Sbjct 3637 TGAAAATTTATTAGTTTTAAAAAACAACAGGGGAATTGAAGAAAATAGAGTACGTCATGT 3696 Query 128814 GGACTATTGCTTCCAAATCAATAAGACATTATATCAACGATTGATTGATGGAAAAGACAT 128873 |||||| | ||||| ||||| | |||||| || || | ||||| | || Sbjct 3697 CGACTATGCAATTCAAATTAATAAATTCATGTATCAAAGAATGTTATCAGGAAACCAAAT 3756 Query 128874 TACATTCTTTAGCCCACATGATGTTCCTGATCTATATGATGCATTTTGTGCTGATCAAGA 128933 ||| | ||||| || ||||||||||| ||||||| | ||||| | || ||||| | Sbjct 3757 AACACTATTTAGTCCTTCCGATGTTCCTGAGTTATATGAAGTATTTTTTTCTAATCAAAA 3816 Query 128934 AGAATTTGAACGTCTGTATATTAAGTATGAACTCGATGAAACTATTCGTAGGAAAACTAT 128993 | |||||||| | |||||| | |||||| | ||| || | | ||||| | Sbjct 3817 AAAATTTGAAGAAATATATATTCAATATGAAAAAAACAAAAAGATAAGAAAAAAAACAGT 3876 Query 128994 GCCAGCGATTGAAGCATTTAGTCAT--CTAATACAAGAGCGTGCAGAAACTGGCCGCATT 129051 ||| | || |||| |||| | || || || | || ||||| || ||| Sbjct 3877 TAAAGCATTAGATTTATTT--TCATTGATTATGCAGGAAAGAACATCTACTGGACGTATT 3934 Query 129052 TATATTCAGAATATTGATAATGCCAATGAGCATGGTTCATTTATTCCAGAAATTGCACCA 129111 ||||| || ||| | ||| || ||| ||| ||||||||| ||| ||| | | ||| Sbjct 3935 TATATACAAAATGTAGATCATTGTAATTCACATAGTTCATTTAATCCTGAATTATCTCCA 3994 Query 129112 ATTGAGCAAAGTAATTTGTGTCAGGAAATTGATTTACCATCT 129153 || | ||| |||||| || ||||||| |||||| || Sbjct 3995 ATAAAACAATCTAATTTATGCTTGGAAATTACATTACCAACT 4036 >seq159469 Length=1977 Score = 156 bits (172), Expect = 9e-33 Identities = 500/766 (65%), Gaps = 10/766 (1%) Strand=Plus/Minus Query 128389 TATGTTAAGAAGTTCTATGATGCTATTAGTACTTTTGATATTAGTTTACCAACTCCGATT 128448 ||| ||||| || ||| |||| ||| ||||||| | ||| |||||||| || ||| Sbjct 1737 TATATTAAGCGTTTTTATAATGCAATTTCTACTTTTAAAATTTCATTACCAACACCCATT 1678 Query 128449 ATGTCCGGTCTTCGCACTAATACACGTCAGTTCTCAAGTTGTGTAGTACT-GAATGTTGG 128507 ||||| || | || ||| ||| |||||||| |||||| || | |||||| | Sbjct 1677 ATGTCTGGAGTACGAACTCCTACTCGTCAGTTTAGTTCTTGTGTTTTAATCGAATGT-GC 1619 Query 128508 CGATAGTCTTGATAGTATTGGTTCCAGTAATCATGCAATCCTGCGTTATATTTCACGTAA 128567 |||| | | | |||| | | | || | | || | ||| | |||| Sbjct 1618 TGATAATTTAAACTCTATTAATGCTACTACTAGCTCTATTGTTAAATATGTATCACAACG 1559 Query 128568 AGCAGGGCTTGGTGTTAATATGGGACGTATTCGTGCAATTGATTCTGCAATTCGTGATGG 128627 || || | ||| ||||| ||||| ||||| || | | | | ||| | | || Sbjct 1558 TGCTGGAATCGGTATTAATGCGGGACAAATTCGCGCGTTAGGAAGTCCTATTAGAAACGG 1499 Query 128628 CGATGCAGTACATACTGGT-GTAGTACCATTCTTATCTGCATTAGCAAAAA-CTGTCAAA 128685 || ||| | ||||||||| ||| |||| || |||| || | |||| | || ||| Sbjct 1498 TGAAGCATTTCATACTGGTTGTA-TACCTTT-TTATAAACACTTTCAAAGTGCCGTAAAA 1441 Query 128686 AGCTGTTCCCAGGGAGGTGTAAGAGGCGGGGCAGCAACCGTACATTTTCCAATGTGGCAT 128745 |||||| || || || || ||||| || || ||||| | || |||||| |||||| Sbjct 1440 TCCTGTTCACAAGGCGGAGTGAGAGGAGGAGCTGCAACTATTTTTTATCCAATATGGCAT 1381 Query 128746 TTGGAATTTGAAAATATTGTAGTACTGAAAAATAATAAAGGAACTGAATTTAACCGAGTA 128805 || ||| |||||| | | |||| | |||||||||| ||||| |||| || |||| Sbjct 1380 TTTGAAGTTGAAAGTTTATTAGTTTTAAAAAATAATAGAGGAATTGAAGAAAATAGAGTG 1321 Query 128806 AGACAACTGGACTATTGCTTCCAAATCAATAAGACATTATATCAACGATTGATTGATGGA 128865 | || | || || | ||||| ||||| | | |||||| || || | ||| Sbjct 1320 CGTCATATTGATTACGCACTTCAAATTAATAAATTAATGTATCAAAGAATGTTATCAGGA 1261 Query 128866 AAAGACATTACATTCTTTAGCCCACATGATGTTCCTGATCTATATGATGCATTTTGTGCT 128925 | || ||||| ||||| || |||||||||||| ||||| || | ||||| | | Sbjct 1260 GATATAATAACATTATTTAGTCCTTCTGATGTTCCTGAACTATACGAAGTATTTTTTTCA 1201 Query 128926 GATCAAGAAGAATTTGAACGTCTGTATATTAAGTATGAACTCGATGAAACTATTCGTAGG 128985 |||||| || |||||||| |||||||| | |||||| ||| ||| ||| | | Sbjct 1200 GATCAAAAAAAATTTGAAGAAATGTATATTCAATATGAAAAAGATAAAAATATAAGAAAA 1141 Query 128986 AAAACTATGCCAGCGATTGAAGCATTTAGTCAT--CTAATACAAGAGCGTGCAGAAACTG 129043 |||| || ||| | || ||| |||| | || ||||| | | |||| Sbjct 1140 AAAAGAATTAAAGCACTAGA--TCTTTTTTCATTAATGATGCAAGAAAGAACTTCCACTG 1083 Query 129044 GCCGCATTTATATTCAGAATATTGATAATGCCAATGAGCATGGTTCATTTATTCCAGAAA 129103 | || |||||||| || ||| | ||| || ||| ||| ||||||||| ||| | | Sbjct 1082 GACGTATTTATATACAAAATGTAGATCATTGTAATTCACATAGTTCATTTAATCCTGCAT 1023 Query 129104 TTGCACCAATTGAGCAAAGTAATTTGTGTCAGGAAATTGATTTACC 129149 | | ||||| ||| |||||| ||| |||||| ||||| Sbjct 1022 TATCTCCAATAAGACAATCTAATTTATGTTTAGAAATTACATTACC 977 >seq77790 Length=3201 Score = 84.2 bits (92), Expect = 5e-11 Identities = 132/184 (72%), Gaps = 5/184 (3%) Strand=Plus/Minus Query 48473 TGCTGGTACAAAATACCGTGGTGAATTCGAAGAACGTATGGAAGGTATTATTA-AAGAAC 48531 |||||| ||||||||||| || ||||| |||||| | || |||| |||| | ||||| Sbjct 850 TGCTGGCACAAAATACCGAGGGGAATTTGAAGAAAG-ATTGAAGAAATTAATGGAAGAAA 792 Query 48532 TTAAAAAACGAGAAAATGTAATTTTGTTCATTGATGAAGTACATATTATGATGGGTGCTG 48591 | ||| || | || || ||||||||||||||||||| || || | | | || || || | Sbjct 791 TAAAACAAAGTGATGATATAATTTTGTTCATTGATGAGGTTCACACTCTAATTGGGGCAG 732 Query 48592 GTGGTAGCAGCACTGGATCTATGGATATGAGCAATATCATGAAACCTGCACTTTCACGTG 48651 | | ||||| | ||| | || ||| || || ||||||| || ||| || | | Sbjct 731 G-AGCAGCAGAA--GGAGCCATTGATGCTGCTAACATATTGAAACCAGCTCTTGCAAGAG 675 Query 48652 GTGA 48655 |||| Sbjct 674 GTGA 671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1096546552133890