Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_027404.1 Length=167785 Score E Sequences producing significant alignments: (Bits) Value seq159469 205 1e-47 seq30067 192 6e-44 >seq159469 Length=1977 Score = 205 bits (226), Expect = 1e-47 Identities = 306/433 (71%), Gaps = 6/433 (1%) Strand=Plus/Plus Query 138894 TAATCCATATGACGAATGCGGTTTTCTTCTACGCCTTTGTTATTTTTCAAAACGAGAAGA 138953 ||||| |||||||| | | |||||||| | ||| | |||||||| ||||| | | | Sbjct 1307 TAATCAATATGACGCACTCTATTTTCTTCAATTCCTCTATTATTTTTTAAAACTAATAAA 1366 Query 138954 TTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCGCCGCCACGAATTCCA 139013 |||||||||| |||||||| || |||||| || ||| ||||| || || | | ||| Sbjct 1367 CTTTCAACTTCAAAATGCCATATTGGATAAAAAATAGTTGCAGCTCCTCCTCTCACTCCG 1426 Query 139014 CCCTGTGAGCATGATTTAACAGCAGTCTGAAAATGTTTCCAAAAAGGAATAACACCAGTA 139073 || ||||| || ||||| || ||| | ||||| ||||| ||||||| ||| ||||||| Sbjct 1427 CCTTGTGAACAGGATTTTACGGCACTTTGAAAGTGTTTATAAAAAGGTATACAACCAGTA 1486 Query 139074 TGGCGTACTTCACCCATGCCAATCTTAGAACCTTCGGCACGAATCATACCAACGTTAATA 139133 || | ||||||| | | ||| | ||| || ||||| || | |||||| Sbjct 1487 TGAAATGCTTCACCGTTTCTAATAGGACTTCCTAACGCGCGAATTTGTCCCGCATTAATA 1546 Query 139134 CCAATTCCAGCGCGTTTAGAGATATATTCAACAATTGA---AGCGGAAGCCTTATTGATA 139190 || |||||||| |||| || | ||||| |||||| || || | ||| ||| ||| Sbjct 1547 CCGATTCCAGCACGTTGTGATACATATTTAACAATAGAGCTAGTAGTAGCATTA---ATA 1603 Query 139191 GACTTCAATGAATCTCCTGCCTCAATAACAACACATGAACTAAACTGTCGAGTCGGAGTA 139250 || || || ||| | || || | |||||| ||||||||||| ||||| ||||| Sbjct 1604 GAGTTTAAATTATCAGCACATTCGATTAAAACACAAGAACTAAACTGACGAGTAGGAGTT 1663 Query 139251 CGACAACCAGCCATAATAGGAGTTGGTAATGAAATCTGTCGGGTTGATACCGCTTCATAA 139310 || |||| |||||| || |||||||||||||| | || || | || | |||| Sbjct 1664 CGTACTCCAGACATAATGGGTGTTGGTAATGAAATTTTAAAAGTAGAAATTGCATTATAA 1723 Query 139311 AAACGGATAACAT 139323 ||||| ||| || Sbjct 1724 AAACGCTTAATAT 1736 >seq30067 Length=5021 Score = 192 bits (212), Expect = 6e-44 Identities = 295/418 (71%), Gaps = 2/418 (0%) Strand=Plus/Minus Query 138869 CATCAAATCATTCAGCTGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACGCC 138928 ||| || | ||| | |||| |||| || | |||||| | | |||||||| | || Sbjct 3727 CATGAATTTATTAATTTGAATTGCATAGTCGACATGACGTACTCTATTTTCTTCAATTCC 3668 Query 138929 TTTGTTATTTTTCAAAACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGC 138988 |||| ||||| ||||| | | |||||||||||| |||||||| || |||||| || Sbjct 3667 CCTGTTGTTTTTTAAAACTAATAAATTTTCAACTTCAAAATGCCATATTGGATAAAAAAT 3608 Query 138989 AGTAGCAGCGCCGCCACGAATTCCACCCTGTGAGCATGATTTAACAGCAGTCTGAAAATG 139048 ||| ||||| || || | || || || || || || ||||| ||||| | |||||||| Sbjct 3607 AGTTGCAGCTCCACCTCTAACACCTCCTTGAGAACAAGATTTTACAGCGCTTTGAAAATG 3548 Query 139049 TTTCCAAAAAGGAATAACACCAGTATGGCGTACTTCACCCATGCCAATCTTAGAACCTTC 139108 ||| ||||||| ||| ||||||||| | |||| || | | ||| | ||| Sbjct 3547 TTTATAAAAAGGTATACAACCAGTATGAAATGCTTCTCCGTTTCTAATAGGACTTCCTAA 3488 Query 139109 GGCACGAATCATACCAACGTTAATACCAATTCCAGCGCGTTTAGAGATATATTCAACAAT 139168 || ||||| || | ||||||||||||||||| |||| || | ||||| |||||| Sbjct 3487 TGCGCGAATTTGTCCTGCATTAATACCAATTCCAGCACGTTGGGAAACATATTTAACAAT 3428 Query 139169 TGAAGCGGAAGCCTTATTGATAGACTTCAATGAATCTCCTGCCTCAATAACAACACATGA 139228 || | | | ||| || || || || ||| | ||||| | |||||| || Sbjct 3427 AGAGCTAGTTGTCGCATTAATGGAATTTAAATTATCAGCACATTCAATTAAAACACAAGA 3368 Query 139229 ACTAAACTGTCGAGTCGGAGTAC-GACAACCAGCCATAATAGGAGTTGGTAATGAAAT 139285 |||||| || ||||| ||||| | ||| |||| |||||| || |||||||||||||| Sbjct 3367 ACTAAATTGACGAGTAGGAGTTCTGAC-TCCAGACATAATTGGTGTTGGTAATGAAAT 3311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 530905477122000