Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq48246 150 1e-31 seq107321 113 4e-20 seq3554 87.8 1e-12 >seq48246 Length=4099 Score = 150 bits (166), Expect = 1e-31 Identities = 568/875 (65%), Gaps = 21/875 (2%) Strand=Plus/Minus Query 43707 TGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTT 43766 |||| |||||||| || | | | || ||| |||||||||| ||||| | || || |||| Sbjct 2150 TGTTCCCAATTCAGTACCCTCAAATTTGGGAAATGTACAAGAAAGCCGAAGCTTCGTTTT 2091 Query 43767 GGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGCATTAAAACCAC 43826 ||||||| ||||| || |||||| || |||| | || ||| | || | | Sbjct 2090 GGACAGCCGAAGAGGTCGATTTGTCTGAAGATCAACGTCACTGGGACTCGTTGACAGACG 2031 Query 43827 AAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCA 43886 || | || ||||| || || | || || || || || ||| || || || Sbjct 2030 GCGAGAGGCACTTTATCACTCACGTCCTTGCCTTCTTCGCCGCCTCCGATGGCATCGTTT 1971 Query 43887 ATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTT 43946 ||||| | | | || || | |||| |||||| | | || || || || | Sbjct 1970 TGGAAAACCTAGCCGGACGATTCATGAAAGAGGTTCAAGTTGCGGAGGCGCGTGCCTTCT 1911 Query 43947 ATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATA 44006 | || || || |||||||| || ||||| || || || ||||||||| | || | || Sbjct 1910 ACGGATTCCAGATTGCCATCGAGAATATCCACTCCGAGATGTACAGTTTGCTTCTGGAAT 1851 Query 44007 CGTACATCAAAGATGGGCACGAGAA--GCATCGATTGTTTAATGCGATAGAAACAGTACC 44064 | ||||| || || | ||||| ||| || | || || || || || | || Sbjct 1850 CCTACATAAAGGACTCTAATGAGAAAAGCA--GACTCTTCCGAGCAATCGAGACTATTCC 1793 Query 44065 -TGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTTTG 44123 || | | | | | ||||| | ||||| || |||||||| || || | |||| Sbjct 1792 GTGTGTTGAGA-AGAAAGCGAATTGGGCTCTCAAATGGATCGATGGCTCGGAGACGTTTG 1734 Query 44124 GAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTT-TGCG 44182 ||| || || |||| || || || ||||| ||||||||||| ||| || |||| Sbjct 1733 CAGAGCGTATTATCGCTTTCGCTTGCGTTGAAGGGATTTTCTTTTCCGGAAGCTTCTGCG 1674 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 | || |||||||| |||||||| || ||||||||||| || || || || || || ||| Sbjct 1673 -CGATTTTTTGGTTGAAGAAACGTGGGTTGATGCCTGGATTAACCTTCTCGAACGAATTA 1615 Query 44243 ATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACTTGGATATCTAGGA 44302 || || ||||| || ||||| || |||||||| || ||| | ||| | || | | Sbjct 1614 ATCTCGCGAGATGAGGGATTACACTGTGATTTTGCGTGTTTGCTTTATGGGTTACT-GAA 1556 Query 44303 GACGATAAGCCTTCATGTAAG--AC-AATTACAGATATTGTTGTAGAGGCAGTAAAGATA 44359 |||| |||| | | || || || | | | | || || || || || |||| Sbjct 1555 GACG--AAGC--TGA-GTGAGGAACGAGTCAAGGGAATCGTCTCCGATGCGGTGGAGATT 1501 Query 44360 GAACAAGAATT--TATGACAACAGCATTACCTGTAAATTTAATAGGAATGAATGAACTTT 44417 ||| ||| || | || | || |||||| | | |||| ||||| | | Sbjct 1500 GAAAGAGAGTTCGTCTGCGA--TGCCTTACCTTGTGCTCTTGTAGGGATGAACGGGGATC 1443 Query 44418 TGATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAACTGGGTTGCGATA 44477 |||||| |||| || |||| | |||| ||| | ||| | | | |||| | | | Sbjct 1442 TGATGAGTGAATACATCGAATTCGTTGCTGATAGGTTATTGGGTGCATTGGGATATGGGA 1383 Query 44478 AACACTATATTGTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAA 44537 || || | || || ||||||||||||| |||||| |||||||| | || || | Sbjct 1382 AATTGTACAATGCCCAGAACCCGTTTGATTGGATGGAACTGATTTCGTTACAGGGGAAGA 1323 Query 44538 CAAACTTTTTTGAAAAACGCGTTGGAGAATATCAG 44572 | || || || || ||| | ||||| || |||||| Sbjct 1322 CCAATTTCTTCGAGAAAAGGGTTGGTGAGTATCAG 1288 >seq107321 Length=2628 Score = 113 bits (124), Expect = 4e-20 Identities = 381/584 (65%), Gaps = 12/584 (2%) Strand=Plus/Plus Query 43707 TGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTT 43766 |||| ||||| ||||| | | | || ||| ||||||||||||||||| | || ||||||| Sbjct 721 TGTTCCCAATCCAATACCCTCAGATCTGGGAAATGTACAAAAAAGCAGAAGCTTCATTTT 780 Query 43767 GGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCA-CATTGG-ATTGCATTAAAACC 43824 |||| || || || ||||||||| | | ||| ||| || ||| | | | || | Sbjct 781 GGACGGCGGAGGAGGTTGATTTGTCACAGGACC-AGCGTCAGTGGGACAACCT--AAGCG 837 Query 43825 A---CAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGAT 43881 | | ||| || || || || || | || || || || || ||| || || Sbjct 838 ATGGCGAGAGGTAC--TTCATCACTCACGTCCTCGCATTCTTCGCCGCCTCCGATGGAAT 895 Query 43882 AGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATG 43941 || ||||| | | | ||||| | |||| || ||| | | || || || Sbjct 896 CGTATTGGAAAACCTCGCCGGACGGTTCATGAAAGAGGTCCAAGTTGCGGAGGCGCGTGC 955 Query 43942 TTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGAT 44001 || || || || || || || || || || || || || || ||||||||||| || | Sbjct 956 CTTCTACGGATTCCAGATCGCAATCGAGAACATCCACTCCGAGATGTACAGTCTGCTTCT 1015 Query 44002 AGATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGT 44061 || | ||||||||||| |||||||| | | ||||| || || || || | Sbjct 1016 CGAATCATACATCAAAGACTCCAACGAGAAGAGTAGGCTGTTTCGCGCAATCGATACCAT 1075 Query 44062 ACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTT 44121 ||| || | | ||||| | |||||||| | |||||| || | ||| | || Sbjct 1076 CCCTTGCATCCAGAAGAAAGCTAAATGGGCCCTCAGATGGATCGATGGATCTGAAACCTT 1135 Query 44122 TGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGG-ATCGTTTG 44180 | |||||| | |||| || || || ||||| || ||||| || || | | || Sbjct 1136 CGCAGAACGGATCATCGCTTTCGCTTGCGTCGAAGGTATCTTCTTCTCCGGCAGTTTCTG 1195 Query 44181 CGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGT 44240 | |||||||| ||| | || |||||||| | ||||| ||| | || || || || || | Sbjct 1196 C-GCCATATTCTGGCTCAAAAAACGAGGGCTTATGCCAGGGCTAACATTCTCGAACGAAT 1254 Query 44241 TAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTG 44284 | || || || || || || || || || || || |||||| Sbjct 1255 TGATCTCGCGAGACGAGGGTTTGCACTGTGACTTCGCGTGCTTG 1298 >seq3554 Length=9431 Score = 87.8 bits (96), Expect = 1e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 41106 TCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCG 41165 || |||||| ||||||| ||||||| |||||||||||| || || |||||||||||||| Sbjct 3313 TCTTGTCAAATGTATCAGAGATCAGCTGACATGGGACTTGGTGTTCCGTTTAACATAGCT 3372 Query 41166 AGTTATGCTCTGCTCACGTATATGATTGCACACGTT 41201 ||||| || | || | ||||||||||| ||| Sbjct 3373 TCATATGCGTTGTTGACTTGCATGATTGCACATGTT 3408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 393212127540550