Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq102355 116 3e-21 seq75854 104 2e-17 seq86036 102 7e-17 seq40887 98.7 8e-16 seq6274 96.9 3e-15 seq27206 86.0 5e-12 seq90319 84.2 2e-11 >seq102355 Length=2708 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 ||||||| || | || | || | ||| | ||| || |||||||| |||||||| ||| Sbjct 857 TGCCTCCACGAAGACGGAGAACGAGATGGAGCGTCGATTCTTTTTGGATATTGTAATCGG 798 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | | || ||||||||||||||||||||||| | || ||||| ||||||||||| | Sbjct 797 CGAGAGTACGGCCGTCTTCGAGCTGTTTACCGGCGAAGATAAGACGTTGTTGATCCGGAG 738 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | || || || || ||||| |||| | | || | || || | || | Sbjct 737 GAATTCCTTCCTTGTCCTGTATCTTCGTTTTAACATTGTCGATCGTATCGGAACTCTCGA 678 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 |||| |||||||| | || ||||| || ||||||||||| || ||||| Sbjct 677 CTTCGAGAGTTATCGTCTTCCCCGTTAGGGTTTTCACAAAAATCTGCAT 629 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 27045 TGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTCGAGCTG 27103 || || || || || || || || || || || || | ||| ||| | ||||| | || Sbjct 1515 TGCAAAGTGGACTCCTTCTGGATGTTATAATCAGCCAAAGTT-CGCCCATCTTCCAATTG 1457 Query 27104 TTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTT 27163 || |||||| | || | |||||||||||||| || | ||||| ||||| ||| || Sbjct 1456 CTTCCCGGCGAAGATCAATCGCTGTTGATCCGGTGGAATCCCCTCCTTATCCTGGATTTT 1397 Query 27164 GTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGT 27223 |||| | | || | ||| || | | ||| || || |||||||||| ||| ||||| Sbjct 1396 AGCCTTCACGTTATCGATAGTATCAGAGCTTTCCACCTCCAGAGTTATAGTTTTACCCGT 1337 Query 27224 CAGAGTTTTCACAAAGATTTGCATA 27248 | ||| ||||||||||| |||||| Sbjct 1336 TAAAGTCTTCACAAAGATCTGCATA 1312 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| || | || | || | ||| | ||| || || ||||| || ||||||||| Sbjct 1083 CCTCCACGAAGACGAAGGACGAGATGAAGCGTTGACTCCTTTTGGATGTTGTAGTCGGCG 1024 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | || |||| || ||||||||||||||| | |||||||| || ||||| || || Sbjct 1023 AGGGTACGGCCGTCCTCAAGCTGTTTACCGGCGAAGATGAGACGTTGCTGATCGGGAGGG 964 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || || || || ||||| | |||| | | || | ||||| | | || || Sbjct 963 ATTCCTTCCTTGTCTTGAATCTTTGTCTTCACGTTGTCGATTGTGTCCGAGCTCTCCACC 904 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || | || || | || || ||||| ||||| || ||||||||||| Sbjct 903 TCCAACGTGATCGTCTTTCCGGTCAGGGTTTTGACGAAGATTTGCAT 857 Score = 82.4 bits (90), Expect = 6e-11 Identities = 159/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCT 27079 || ||||||| || | |||| || | || || || || || || || ||||| || Sbjct 1311 CCACCGCGCAGACGAAGAACCAGGTGGAGAGTCGACTCCTTCTGGATGTTATAGTCTGCA 1252 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 |||| ||| | || || || ||||| |||||| | || | |||||||||||||| || Sbjct 1251 AGTGTT-CGCCCATCCTCCAGTTGTTTTCCGGCGAAGATCAATCGCTGTTGATCCGGTGG 1193 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | ||||| ||||| || ||| |||| | | | || | ||||| | | ||||| Sbjct 1192 AATCCCCTCCTTATCTTGAATTTTGGTTTTAACGTTATCGATGGTGTCGGAGCTCTCAAC 1133 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCT 27251 || | || || | || || || || ||||| || ||||| |||||| || Sbjct 1132 CTCCAAGGTGATTGTCTTTCCGGTGAGGGTTTTAACGAAGATCTGCATACCT 1081 >seq75854 Length=3247 Score = 104 bits (114), Expect = 2e-17 Identities = 144/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCG-CTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 || || || ||||| ||||| |||||| || ||| || |||| |||||||| || || Sbjct 2827 GTTGACTCCTTTTGGATATTATAGTCGGCTAGGGTTCTGC-CGTCCTCGAGCTGCTTGCC 2885 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 |||| | ||||| || ||||||||||| || | || || || || ||||||| |||| Sbjct 2886 GGCGAAGATGAGCCGTTGTTGATCCGGAGGAATTCCTTCCTTGTCCTGGATCTTGGTTTT 2945 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 | | | || | || |||| || || || ||||| || | || || || || || Sbjct 2946 GACGTTATCAATGGTATCTGAACTCTCCACCTCGAGAGTAATCGTCTTCCCAGTTAGTGT 3005 Query 27230 TTTCACAAAGATTTGCATA 27248 |||||||||||| |||||| Sbjct 3006 TTTCACAAAGATCTGCATA 3024 >seq86036 Length=3019 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 ||||||| || | || | || | ||| | ||| || || || || |||||||| ||| Sbjct 893 TGCCTCCACGAAGACGAAGAACAAGATGGAGCGTCGATTCCTTCTGTATATTGTAATCGG 952 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | | || ||||||||||||||||||||||| | || ||||| |||||||| || | Sbjct 953 CGAGAGTACGGCCGTCTTCGAGCTGTTTACCGGCGAAGATAAGACGTTGTTGATCTGGAG 1012 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | || || || || ||||| |||||| | || | || || | || | Sbjct 1013 GGATTCCTTCCTTGTCCTGTATCTTCGTTTTCACATTGTCGATCGTATCGGAACTCTCGA 1072 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 |||| ||||| || | || || || || |||||||||||||| ||||| Sbjct 1073 CTTCAAGAGTAATCGTCTTACCGGTTAGGGTTTTCACAAAGATCTGCAT 1121 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| || | || | || | ||| | ||| || || ||||| || ||||||||| Sbjct 667 CCTCCACGAAGACGGAGGACGAGATGAAGCGTTGACTCCTTTTGGATGTTGTAGTCGGCG 726 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | || |||| || ||||||||||||||| | ||||||||||||||||| || || Sbjct 727 AGGGTACGGCCGTCCTCAAGCTGTTTACCGGCGAAGATGAGACGCTGTTGATCGGGAGGG 786 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || || || || ||||| | |||| | | || | || || | | || || Sbjct 787 ATTCCTTCCTTGTCTTGAATCTTCGTCTTCACGTTGTCGATTGTATCAGAGCTCTCGACC 846 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || | || || | || || || || ||||| || ||||| ||||| Sbjct 847 TCCAACGTGATCGTCTTTCCGGTTAGGGTTTTGACGAAGATCTGCAT 893 Score = 82.4 bits (90), Expect = 6e-11 Identities = 159/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCT 27079 || ||||||| || | |||| || | || || || || || || || ||||| || Sbjct 439 CCACCGCGCAGACGAAGAACCAGGTGGAGAGTCGACTCCTTCTGGATGTTATAGTCTGCA 498 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 |||| ||| | || || || ||||| |||||| | || | |||||||||||||| || Sbjct 499 AGTGTT-CGCCCATCCTCCAGTTGTTTTCCGGCGAAGATCAATCGCTGTTGATCCGGTGG 557 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | ||||| ||||| || ||| |||| | | | || | ||||| | | ||||| Sbjct 558 AATCCCCTCCTTATCTTGAATTTTGGTTTTAACGTTATCGATGGTGTCGGAGCTCTCAAC 617 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCT 27251 || | || || | || || || || ||||| || ||||| |||||| || Sbjct 618 CTCCAAGGTGATCGTCTTCCCGGTGAGGGTTTTAACGAAGATCTGCATACCT 669 >seq40887 Length=4418 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || ||||| || || ||||||||| | | |||| ||||||| |||||||||||| Sbjct 2269 GTGGACTCTTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCTTCAAGCTGTTTACCG 2210 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | || | | |||||| || || || | || || || || ||| || ||| Sbjct 2209 GCGAAGATCAACCTCTGTTGGTCTGGTGGGATCCCTTCCTTGTCTTGGATTTTAGCTTTG 2150 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | | ||| ||||| | || |||| ||| || || |||||| Sbjct 2149 ACGTTGTCGATGGTGTCAGAGCTTTCGACTTCCAAGGTGATAGTTTTTCCGGTGAGAGTT 2090 Query 27231 TTCACAAAGATTTGCAT 27247 || || ||||||||||| Sbjct 2089 TTGACGAAGATTTGCAT 2073 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || || | ||| | |||| ||| | || || || || || || ||||||||| | Sbjct 2983 CCACCACGGAGCCGGAGAACCAGATGAAGTGTCGACTCCTTCTGGATGTTGTAGTCGGCC 2924 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | || |||| || | |||||| |||||| | || || | ||| || ||||| || Sbjct 2923 AACGTCCGGCCGTCCTCCAACTGTTTTCCGGCGAAGATAAGCCTCTGCTGGTCCGGTGGG 2864 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || || ||||| |||||| ||||| | || | ||||| | | ||||||| Sbjct 2863 ATCCCTTCCTTATCTTGGATCTTTGCTTTCACATTATCGATGGTGTCGGAGCTTTCAACT 2804 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCT 27251 || | || || | ||| || |||| || ||||||||||| |||||| || Sbjct 2803 TCCAAGGTAATGGTTTTTCCGGTCAAGGTCTTCACAAAGATCTGCATACCT 2753 Score = 91.5 bits (100), Expect = 1e-13 Identities = 143/202 (71%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 ||||| || || || || || ||||| || |||| || |||| ||||||||||| || Sbjct 2725 GTAGACTCCTTCTGGATGTTATAGTCCGCCAATGTCCGGC-CGTCCTCGAGCTGTTTTCC 2667 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 |||| | |||||||| || || || || || | ||| || || || || || ||| Sbjct 2666 GGCGAAGATGAGACGTTGCTGGTCTGGGGGAATACCTTCCTTGTCTTGAATTTTAGCTTT 2607 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 | | | || | ||||| | | ||| ||||| | || || | ||| || |||| || Sbjct 2606 GACGTTGTCAATGGTGTCGGAGCTTTCCACTTCCAAGGTGATTGTTTTTCCGGTCAAGGT 2547 Query 27230 TTTCACAAAGATTTGCATAGCT 27251 |||||||||||| |||||| || Sbjct 2546 TTTCACAAAGATCTGCATACCT 2525 >seq6274 Length=8207 Score = 96.9 bits (106), Expect = 3e-15 Identities = 186/274 (68%), Gaps = 3/274 (1%) Strand=Plus/Plus Query 131724 tttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGCCA 131783 |||| |||||| | ||| || || || || |||||||| ||||||||||| || || | Sbjct 4815 TTTTCCTCAAATCAAGAAACTCAAAGATATCAGCATGCCATGGTTCCAAATAAACAGCAA 4874 Query 131784 TTGCGCCTTTGCGCTT---ACCGCCTTGATTAACATGACGAACCATGTTGTTGTATACGC 131840 ||| || || | || ||| ||||| | ||||| ||| | ||| || | || | Sbjct 4875 ATGCACCCTTTCTTTTACCACCTCCTTGGTCAACATATCGAGCAGTGTCATTAAACACAC 4934 Query 131841 GCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTAATGTAGCTGCCATTGG 131900 ||||||| || | ||| || | ||||||| |||| ||||| || ||| | | Sbjct 4935 GCAACATTGGAATAATACCATTAGATGTTCCATTTGTGCCACGTATGTAACTTCCAGTTG 4994 Query 131901 CTCTGATTTTGTGAACGTTGAGTCCAATACCTCCGCCGTATTTAGAGATTAGTGCGCATT 131960 ||||||| || || || || |||||||| || | |||| ||| | || |||| Sbjct 4995 CTCTGATATTATGCACAGAGACACCAATACCCCCTGCTGATTTGCTGATAACAGCACATT 5054 Query 131961 TGGTTAGAGTGTTATAGATACCTTCCACGCTGTC 131994 ||| ||| | |||||| ||||| | ||| || Sbjct 5055 CTTTTAAAGTATCATAGATGCCTTCAATGCTATC 5088 >seq27206 Length=5223 Score = 86.0 bits (94), Expect = 5e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCG-CTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 || || || ||||| ||||| || ||| || ||| || |||| |||||||| || || Sbjct 3317 GTGGACTCCTTTTGGATATTATAATCGGCTAGGGTTCTGC-CGTCCTCGAGCTGCTTGCC 3375 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 |||| | ||||| || ||||||||||| || | || || || || ||||||| ||| Sbjct 3376 GGCGAAGATGAGCCGTTGTTGATCCGGAGGAATTCCTTCCTTGTCCTGGATCTTGGCTTT 3435 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 | | || | || || | || || || ||||| || | || ||||| || || Sbjct 3436 GACATTATCAATGGTATCGGAACTCTCCACCTCGAGAGTAATCGTCTTCCCCGTTAGGGT 3495 Query 27230 TTTCACAAAGATTTGCATA 27248 |||||| ||||| |||||| Sbjct 3496 TTTCACGAAGATCTGCATA 3514 >seq90319 Length=2932 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 |||||||| | || || || || || || ||||||||| | | | | ||||||| Sbjct 1189 ACCAAATGGAGGGTTGATTCCTTCTGGATGTTGTAGTCGGCGAGGGTTCTGCCGTCTTCT 1248 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 |||||||| |||||| | || | | |||||| || || || | || || || || | Sbjct 1249 AGCTGTTTTCCGGCGAAGATCAATCTCTGTTGGTCTGGGGGAATTCCTTCCTTGTCCTGG 1308 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| |||| | | || | ||||| | | || || || | || || | ||| Sbjct 1309 ATCTTGGCCTTCACGTTGTCGATGGTGTCGGAGCTCTCCACCTCCAAGGTGATGGTTTTT 1368 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || |||| |||||||||||||| ||||| Sbjct 1369 CCGGTCAAGGTTTTCACAAAGATCTGCAT 1397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420397124434320