Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_027983.1 Length=167435 Score E Sequences producing significant alignments: (Bits) Value seq159469 228 9e-55 seq30067 203 3e-47 seq118173 107 2e-18 >seq159469 Length=1977 Score = 228 bits (252), Expect = 9e-55 Identities = 326/458 (71%), Gaps = 6/458 (1%) Strand=Plus/Plus Query 139889 CATCAAATCATTCAGTTGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACGCC 139948 ||| || | ||| | ||||| | ||||| |||||||| | | |||||||| | || Sbjct 1282 CATTAATTTATTAATTTGAAGTGCGTAATCAATATGACGCACTCTATTTTCTTCAATTCC 1341 Query 139949 TTTGTTATTTTTCAAAACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGC 140008 | | |||||||| ||||| | | | |||||||||| |||||||| || |||||| || Sbjct 1342 TCTATTATTTTTTAAAACTAATAAACTTTCAACTTCAAAATGCCATATTGGATAAAAAAT 1401 Query 140009 AGTAGCAGCGCCGCCACGAATTCCACCCTGTGAACATGATTTAACTGCAGTCTGAAAATG 140068 ||| ||||| || || | | ||| || |||||||| ||||| || ||| | ||||| || Sbjct 1402 AGTTGCAGCTCCTCCTCTCACTCCGCCTTGTGAACAGGATTTTACGGCACTTTGAAAGTG 1461 Query 140069 TTTCCAAAAAGGAATAACACCAGTATGGCGTACTTCACCCATGCCAATCTTAGAACCTTC 140128 ||| ||||||| ||| ||||||||| | ||||||| | | ||| | ||| Sbjct 1462 TTTATAAAAAGGTATACAACCAGTATGAAATGCTTCACCGTTTCTAATAGGACTTCCTAA 1521 Query 140129 GGCACGAATCATACCAACGTTAATACCAATTCCAGCGCGTTTAGAGATATATTCTACAAT 140188 || ||||| || | |||||||| |||||||| |||| || | ||||| ||||| Sbjct 1522 CGCGCGAATTTGTCCCGCATTAATACCGATTCCAGCACGTTGTGATACATATTTAACAAT 1581 Query 140189 CGA---AGCGGAAGCCTTATTGATAGACTTTAATGAATCACCTGCCTCAATAACAACACA 140245 || || | ||| ||| ||||| ||||| |||| | || || | |||||| Sbjct 1582 AGAGCTAGTAGTAGCATTA---ATAGAGTTTAAATTATCAGCACATTCGATTAAAACACA 1638 Query 140246 TGAACTAAACTGTCGAGTCGGAGTACGGCAACCAGCCATAATAGGAGTTGGCAATGAAAT 140305 ||||||||||| ||||| ||||| || |||| |||||| || ||||| |||||||| Sbjct 1639 AGAACTAAACTGACGAGTAGGAGTTCGTACTCCAGACATAATGGGTGTTGGTAATGAAAT 1698 Query 140306 CTGTCGAGTAGATACTGCTTCATAAAAACGGATAACAT 140343 | |||||| | ||| | ||||||||| ||| || Sbjct 1699 TTTAAAAGTAGAAATTGCATTATAAAAACGCTTAATAT 1736 >seq30067 Length=5021 Score = 203 bits (224), Expect = 3e-47 Identities = 313/447 (70%), Gaps = 0/447 (0%) Strand=Plus/Minus Query 139889 CATCAAATCATTCAGTTGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACGCC 139948 ||| || | ||| | ||||| |||| || | |||||| | | |||||||| | || Sbjct 3727 CATGAATTTATTAATTTGAATTGCATAGTCGACATGACGTACTCTATTTTCTTCAATTCC 3668 Query 139949 TTTGTTATTTTTCAAAACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGC 140008 |||| ||||| ||||| | | |||||||||||| |||||||| || |||||| || Sbjct 3667 CCTGTTGTTTTTTAAAACTAATAAATTTTCAACTTCAAAATGCCATATTGGATAAAAAAT 3608 Query 140009 AGTAGCAGCGCCGCCACGAATTCCACCCTGTGAACATGATTTAACTGCAGTCTGAAAATG 140068 ||| ||||| || || | || || || || ||||| ||||| || || | |||||||| Sbjct 3607 AGTTGCAGCTCCACCTCTAACACCTCCTTGAGAACAAGATTTTACAGCGCTTTGAAAATG 3548 Query 140069 TTTCCAAAAAGGAATAACACCAGTATGGCGTACTTCACCCATGCCAATCTTAGAACCTTC 140128 ||| ||||||| ||| ||||||||| | |||| || | | ||| | ||| Sbjct 3547 TTTATAAAAAGGTATACAACCAGTATGAAATGCTTCTCCGTTTCTAATAGGACTTCCTAA 3488 Query 140129 GGCACGAATCATACCAACGTTAATACCAATTCCAGCGCGTTTAGAGATATATTCTACAAT 140188 || ||||| || | ||||||||||||||||| |||| || | ||||| ||||| Sbjct 3487 TGCGCGAATTTGTCCTGCATTAATACCAATTCCAGCACGTTGGGAAACATATTTAACAAT 3428 Query 140189 CGAAGCGGAAGCCTTATTGATAGACTTTAATGAATCACCTGCCTCAATAACAACACATGA 140248 || | | | ||| || || ||||| |||| | ||||| | |||||| || Sbjct 3427 AGAGCTAGTTGTCGCATTAATGGAATTTAAATTATCAGCACATTCAATTAAAACACAAGA 3368 Query 140249 ACTAAACTGTCGAGTCGGAGTACGGCAACCAGCCATAATAGGAGTTGGCAATGAAATCTG 140308 |||||| || ||||| ||||| | | |||| |||||| || ||||| |||||||| | Sbjct 3367 ACTAAATTGACGAGTAGGAGTTCTGACTCCAGACATAATTGGTGTTGGTAATGAAATTTT 3308 Query 140309 TCGAGTAGATACTGCTTCATAAAAACG 140335 |||||| | || | |||||||| Sbjct 3307 AAAAGTAGAAATAGCATTGTAAAAACG 3281 >seq118173 Length=2464 Score = 107 bits (118), Expect = 2e-18 Identities = 314/473 (66%), Gaps = 22/473 (5%) Strand=Plus/Plus Query 138092 CCAATAACGAGT---TTTAATCAGAACATCATCATAATAACGTCCAATGGATTCAGCACG 138148 |||||||| ||| | | ||||| ||||||||||| ||| || |||||| Sbjct 1918 CCAATAACTAGTCAATGTTATCAGT---TCATCATAATAGATAGAAATATTTTTAGCACG 1974 Query 138149 TTTCATAATAGCTTCATCTAATACAATCTCATCAAATACCTTCGATGGATCAGTATA-AA 138207 | ||||| || || | | | ||| ||||||||||| |||||| ||| | || Sbjct 1975 ATCATTAATATGTTTATTTGAAATAATATCATCAAATACTACAGATGGAG-AGTTGACAA 2033 Query 138208 GATTTCGCATGATATGAGTATATGAACGACTGTGAATAGTTTCACTAAAAGTCCATGTAG 138267 |||| || ||||||||||| |||||| || |||||||| ||||| |||||| Sbjct 2034 TGTTTCTAATTATATGAGTATAAGAACGAGAATGTATAGTTTCTGAAAAAGACCATGTTT 2093 Query 138268 CAACCCATGTATCAAGACTTGGGTCTGAAATTAATG--ACATAAG-TACAGCAGACGGCG 138324 |||||||||| || || || ||||| | || | | ||| || | || ||| Sbjct 2094 CAACCCATGTCTCTAGTTCAGGAATAGAAATGATTGGTAAAAAAGCTATATTAG--GGCT 2151 Query 138325 CACGACCCTGAATGCTATCCAAAAGTGATTGATACTTCAGGTTGTTAGTAAAAATATTTT 138384 | || ||||| ||| | | || |||||| || | || || ||||||||| || Sbjct 2152 T-CTTCCTTGAATAGAATCAAGTAATGTTTGATATTTTAAATTACTAATAAAAATATGTT 2210 Query 138385 GCTGGTACTGAGGAAGCTTATTAAACTGTGCAGCATCCATCATTA---AGTT-TACTTCT 138440 | | | ||| | || | ||| | | || |||| | || | || |||| Sbjct 2211 TTTCATTATTAGGTAAGTTTTGAAAATCTAT----TCTATCACGAGAGAGATCTATTTCT 2266 Query 138441 TCAGGACGCCAGAAAAATGATAATTGCTTTTCGGTTAAATCTTCAAAAACTTTATGACGT 138500 ||||| | ||| |||||||||||||| ||||| |||| | |||||||| |||| | Sbjct 2267 TCAGGTCTCCAAAAAAATGATAATTGTTTTTCAATTAATTGTTCAAAAATATTATATTTT 2326 Query 138501 TGAATATCATAACGCGCAATACCAAGACCTGAACCAAAAAACATAGGTTCTTT 138553 || |||||| | |||||| | | | |||||||||||||||||||| Sbjct 2327 TGTTGATCATACCTAGCAATATTTACAGGTTGCCCAAAAAACATAGGTTCTTT 2379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 529797742662000