Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_027995.1 Length=41666 Score E Sequences producing significant alignments: (Bits) Value seq227744 107 5e-19 seq342690 89.7 1e-13 >seq227744 Length=1455 Score = 107 bits (118), Expect = 5e-19 Identities = 187/272 (69%), Gaps = 0/272 (0%) Strand=Plus/Plus Query 41187 ATTGGCAACTTAGGCAACGATCCAGAAATCCGTTACATGCCAAGCGGCGGCGCGGTTGCT 41246 ||||| | ||||| | ||||| ||| | ||||| ||||||| || || || | Sbjct 141 ATTGGGCATTTAGGGCAAGATCCTGAAGTTCGTTATATGCCAAATGGTAATGCAGTAGTA 200 Query 41247 AATCTAAGCATCGCCACAACTGAAAGCTGGAAGGATAAAACCACCGGCGAGAAGAAAGAA 41306 ||| | | | || || | |||| ||||| ||||||| ||| || || || |||||| Sbjct 201 AATATGACATTAGCTACTTCAGAAAATTGGAAAGATAAAAACACTGGGGAAAATAAAGAA 260 Query 41307 CAAACGGAATGGCACCGCGTTGTCATCTTCGGTAAGCTGGCAGAAATTGCTAGCGAATAC 41366 |||| |||||||| || | || | || || || | |||||||||||| ||||||| Sbjct 261 AAAACAGAATGGCATCGAATAGTTTTATTTGGAAAATTAGCAGAAATTGCTGGCGAATAT 320 Query 41367 CTGCGCAAAGGTAGCAAGGTGTTCATTGAAGGCAGCCTGCGAACGCGTAAATGGCAGGAC 41426 || || |||||| | || | |||||||| | | ||| | |||||||| || Sbjct 321 CTTCGAAAAGGTTCTCAAGTATATATTGAAGGATCGTTACAAACTAGAAAATGGCAAGAT 380 Query 41427 CAGGCTGGCGTTGATCGCTACACCACTGAAAT 41458 || ||| |||| || ||||| || ||||| Sbjct 381 CAAAATGGACTTGAACGTTACACTACAGAAAT 412 >seq342690 Length=956 Score = 89.7 bits (98), Expect = 1e-13 Identities = 183/272 (67%), Gaps = 0/272 (0%) Strand=Plus/Minus Query 41187 ATTGGCAACTTAGGCAACGATCCAGAAATCCGTTACATGCCAAGCGGCGGCGCGGTTGCT 41246 ||||| | ||||| | ||||||||| | ||||| ||||| | || || || | Sbjct 893 ATTGGACATTTAGGACAAGATCCAGAAGTACGTTATATGCCCAATGGTAATGCAGTAGTA 834 Query 41247 AATCTAAGCATCGCCACAACTGAAAGCTGGAAGGATAAAACCACCGGCGAGAAGAAAGAA 41306 ||| | | | || || | |||| ||||| ||||||| || || || || |||||| Sbjct 833 AATATGACTTTAGCAACTTCAGAAAATTGGAAAGATAAAAATACTGGAGAAAATAAAGAA 774 Query 41307 CAAACGGAATGGCACCGCGTTGTCATCTTCGGTAAGCTGGCAGAAATTGCTAGCGAATAC 41366 |||| |||||||| | | || | || || || | ||||||||||| | ||||| Sbjct 773 AAAACAGAATGGCATAGAATAGTATTATTTGGAAAATTAGCAGAAATTGCCGGTGAATAT 714 Query 41367 CTGCGCAAAGGTAGCAAGGTGTTCATTGAAGGCAGCCTGCGAACGCGTAAATGGCAGGAC 41426 || || |||||| | || | |||||||| || | ||| | |||||||| ||| Sbjct 713 CTTCGAAAAGGTTCTCAAGTATATATTGAAGGATCACTACAAACTAGAAAATGGCAAGAC 654 Query 41427 CAGGCTGGCGTTGATCGCTACACCACTGAAAT 41458 || ||| | || || || || || ||||| Sbjct 653 CAAAATGGTTTAGAACGTTATACTACAGAAAT 622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 131823713130960