Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq48246 107 2e-18 seq107321 102 1e-16 seq1209 102 1e-16 seq17013 96.9 4e-15 seq108547 89.7 6e-13 seq29544 89.7 6e-13 seq6274 86.0 8e-12 >seq48246 Length=4099 Score = 107 bits (118), Expect = 2e-18 Identities = 166/236 (70%), Gaps = 7/236 (3%) Strand=Plus/Plus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| || ||| | ||||||||||| || || | ||| || |||||| || || Sbjct 1580 GCAAAATCACAGTGTAATCCCTCATCTCGCGAGATTAATTCGTTCGAGAAGGTTAATCCA 1639 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778 ||||| | || || |||||||||||| |||| |||||||| ||||| ||||| || Sbjct 1640 GGCATCAACCCACGTTTCTTCAACCAAAAAATCGCGCAGAAGCTTCCGGAAAAGAAAATC 1699 Query 122779 CCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGG--AGCGAGACTTTGCATCAA 122836 || || || || || || || | || || || || || | |||| |||| | Sbjct 1700 CCTTCAACGCAAGCGAAAGCGATAATACGCTCTGCAAACGTCTCCGAG-----CCATCGA 1754 Query 122837 ACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCT 122892 |||||| | ||||| ||||| |||||||||| ||| || | ||| | ||| ||| Sbjct 1755 TCCATTTGAGAGCCCAATTCGCTTTCTTCTCAACACACGGAATAGTCTCGATTGCT 1810 >seq107321 Length=2628 Score = 102 bits (112), Expect = 1e-16 Identities = 141/197 (72%), Gaps = 3/197 (2%) Strand=Plus/Minus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 ||| | |||||| ||||| || || | ||| || ||||| ||| |||||||| || || Sbjct 1280 GTGCAAACCCTCGTCTCGCGAGATCAATTCGTTCGAGAATGTTAGCCCTGGCATAAGCCC 1221 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 || || || | ||| | || |||||||| ||||||||||||||||| || || || Sbjct 1220 TCGTTTTTTGAGCCAGAATATGGCGCAGAAACTGCCGGAGAAGAAGATACCTTCGACGCA 1161 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAACCATTTCATTGC 122849 || || || | | ||||| ||||||| ||| | |||| | |||| | | || Sbjct 1160 AGCGAAAGCGATGATCCGTTCTGCGAAGGTTTCAGA---TCCATCGATCCATCTGAGGGC 1104 Query 122850 CCATTTCGCCTTCTTCT 122866 |||||| || ||||||| Sbjct 1103 CCATTTAGCTTTCTTCT 1087 >seq1209 Length=11671 Score = 102 bits (112), Expect = 1e-16 Identities = 176/254 (69%), Gaps = 4/254 (2%) Strand=Plus/Minus Query 11482 ATCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAA 11541 |||||| ||||| | |||||||| || |||| ||| | ||| || || | ||||| Sbjct 2618 ATCAAGAATATCAGCACGATTAGTAGCTGCAACAACAATAATACCCGTATTCCCTTCAAA 2559 Query 11542 GCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCAT 11601 |||||||| || || | | ||||| | ||| ||||| || |||||||| | | | Sbjct 2558 TCCATCCATTTCAGTCAAAAGCTGATTCAATGTCTGTTCCCTTTCATCATTCCCA--CCT 2501 Query 11602 ACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACAT 11659 | | |||| | | ||| | || || |||||||||||||||| || |||||||| Sbjct 2500 CCAATTCCAGTTCCTCTTTGTCTCCCAACTGCATCAATCTCATCAACAAACACAATACAC 2441 Query 11660 GGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACA 11719 || ||| || || ||| ||| | ||| | || || || || ||||||||| Sbjct 2440 GGAGCATTCTCTTTTGCCTTTTTAAACAAATCCCTCACTCTCGAAGCCCCAACACCAACA 2381 Query 11720 AACATCTCCACAAA 11733 |||||||| ||||| Sbjct 2380 AACATCTCAACAAA 2367 >seq17013 Length=6145 Score = 96.9 bits (106), Expect = 4e-15 Identities = 187/276 (68%), Gaps = 0/276 (0%) Strand=Plus/Minus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 ||| |||||||| || || | ||||||||||| |||||||| || |||||||| | Sbjct 1413 AAAACCATCCATTTCTGTCAACAATTGATTAATAGTTTGTTCCCTTTCATCATTCCCACC 1354 Query 11599 CATACCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACA 11658 | ||| |||| | ||| | || || ||||| || ||||||||||| ||||| || Sbjct 1353 ACCAAGACCTGCACCTCTTTGTCTTCCGACTGCATCTATTTCATCAATGAACACAATGCA 1294 Query 11659 TGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAAC 11718 ||| ||| || ||||||| | ||| | ||| || ||||| ||||| || Sbjct 1293 AGGTGCTTTTGATTTCGCCTTTTCAAACAAATCCCTAACTCTAGATGCACCAACACCCAC 1234 Query 11719 AAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCGC 11778 ||| | ||| || || | || |||| || || ||||| ||| | ||| || || Sbjct 1233 AAATAACTCAACGAATTCTGATGCAGCACATGAGAAAAATGGCACACCAGCTTCTCCGGC 1174 Query 11779 GATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 | || | || | |||||||| || || ||||| Sbjct 1173 CACCGCCCTAGCCAAAAGGGTCTTCCCGGTTCCTGG 1138 >seq108547 Length=2609 Score = 89.7 bits (98), Expect = 6e-13 Identities = 201/295 (68%), Gaps = 13/295 (4%) Strand=Plus/Plus Query 11446 CTTG-CGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAG 11504 |||| |||||||||||||| || || | || || ||| | | ||| | ||||| Sbjct 917 CTTGACGATCAAAACGACCAGGACGTAAAAGAGCTGGATCTAAAACATCAGGCCTATTAG 976 Query 11505 TGGCCGCAATAACCACAATGCCAGTCTCATTG---TCAAAGCCATCCATCTCGGTGAGTA 11561 | || ||||| | | || || |||||| ||||| |||||||| || | | Sbjct 977 TAGCAGCAATCAAGATGATACC---CTCATTCCCATCAAAACCATCCATTTCTACTAACA 1033 Query 11562 ATTGATTAATTGTTTGTTCTCTCTCATCATTTGCT-GGCATACCACCAGCACTGCGTTGC 11620 ||| |||| |||||||||||| ||||||| | || | || |||| | | ||| Sbjct 1034 TTTGGTTAAGTGTTTGTTCTCTTTCATCATGTCCTCCACCTA-ATCCAGTGCCCCTTTGA 1092 Query 11621 TTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGT--TGATTTTCGCGGGCGA 11678 || || |||||||| || ||||| || | ||||||||| ||||||| | | Sbjct 1093 CGTCCTACAGCATCAATTTCGTCAATAAAAATTATACATGGTGCAGATTTTCTTGAATG- 1151 Query 11679 TTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAA 11733 |||||| | ||| || || ||| ||||| || ||||||||||| || ||||| Sbjct 1152 -TTCAAACATATCTCGTACTCTTGAAGCACCTACTCCAACAAACATTTCAACAAA 1205 >seq29544 Length=5055 Score = 89.7 bits (98), Expect = 6e-13 Identities = 177/255 (69%), Gaps = 8/255 (3%) Strand=Plus/Plus Query 9285 AATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAACCATGAATCA 9344 |||||| | || | ||||| | || || ||| || || ||||||||||| |||||| Sbjct 2187 AATTACAGGGAAGCATACGGGATCTTCGCCTGCAATGGCATTCTCTTCAACCACGAATCA 2246 Query 9345 CCGAGACGAGGTGCAGACTTTGTGACCATGAAGATTACCGAGGGTATCAAACAA-ATCAT 9403 || || |||||| | ||||||| |||| ||||| || |||| | | || |||| Sbjct 2247 CCACGAAGAGGTGAAAACTTTGTCACCAGAAAGATCACA-AGGGCAGTAGGCAGGATCAA 2305 Query 9404 GAAGGGT--GAAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGAGAGAGATTGGGGT 9461 || ||| | |||| | ||| ||||| || || | || |||||||||||| Sbjct 2306 GATCGGTCTGCAAAGCAAACTATTC--TTGGGGAATTTACAAGCTTCAAGAGATTGGGGT 2363 Query 9462 CACGCGAAGGACTATGTTGAAGCTATGTGGCTCATGCTTCAACAAGAGGAAGCC-GACGA 9520 || |||||| || ||||| |||||| | ||||| || || || ||||| || || Sbjct 2364 TTTGCAGGGGACTACGTGGAAGCAATGTGGTTGATGCTACAGCAGGA-TAAGCCAGATGA 2422 Query 9521 ATATGTAGTAGCAAC 9535 ||||| || ||||| Sbjct 2423 CTATGTGGTGGCAAC 2437 >seq6274 Length=8207 Score = 86.0 bits (94), Expect = 8e-12 Identities = 114/158 (72%), Gaps = 3/158 (2%) Strand=Plus/Plus Query 111644 AACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCC 111703 || ||||| ||||| | |||||| || |||||||| || | ||| || || | | ||| Sbjct 4823 AAATCAAGAAACTCAAAGATATCAGCATGCCATGGTTCCAAATAAACAGCAAATGCACCC 4882 Query 111704 TTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATT 111760 |||| || || |||| | ||||| || || ||| | ||||| || || | |||| Sbjct 4883 TTTCTTTTACCACCTCCTTGGTCAACATATCGAGCAGTGTCATTAAACACACGCAACATT 4942 Query 111761 GGAATAATACCATCTGATTGACCATTTGTCCCCCGAAT 111798 ||||||||||||| ||| |||||||| || || || Sbjct 4943 GGAATAATACCATTAGATGTTCCATTTGTGCCACGTAT 4980 Score = 84.2 bits (92), Expect = 3e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 111941 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TG 111999 || || || ||||| ||||||||||| ||||| || | || ||| ||||| |||| || Sbjct 5210 TGAGGCCTGGGTGTTCCAGCATTGAAAAGGGTGGGAGAAGCATGAGTGAAC-CACCTCTG 5268 Query 112000 GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGC 112059 ||||| | ||||| | | ||||||||||||||||| || || || | ||| Sbjct 5269 TGACATTAAATGATATGTTTTGATTACAGAATCAATGTCTTCTTTATGAATCCCAACTGC 5328 Query 112060 GACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATA 112119 || | ||| | ||| | || || |||||| | | || || | | | ||||| Sbjct 5329 AACTCTCATCAGCATATGTTGAGGCCTTTCCACAACATTTCCTTCTATCTTTAAGAGATA 5388 Query 112120 GCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 112167 | | ||||||||||||| ||||| ||| || | ||| ||||||| Sbjct 5389 AGACCTTTCAAGGGTTTTGAATCCAAAATAATCATAGTCAAAGTCCCG 5436 Score = 82.4 bits (90), Expect = 9e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 111040 CAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATT 111099 ||||||||| ||| || ||||||||||| || | ||||||||| ||||||| | || Sbjct 3539 CAAAATAAAAGTATCTGCAAGACCTTGAACCCCAATACCAATAGGCCTGTGTCTTAAGTT 3598 Query 111100 AGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTT 111159 ||| || ||||| ||||| || || | ||| ||||||| | ||| |||||| | Sbjct 3599 TGACCTTTTTGCAGTTTCAACAGGGTAGTAGTTTACATCAATGATTTTGTTGAGATTTAT 3658 Query 111160 GGTAACAA 111167 ||||||| Sbjct 3659 TGTAACAA 3666 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 621154186056000