Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq17013 107 2e-18 seq48246 104 3e-17 seq107321 102 1e-16 seq6274 91.5 2e-13 seq1209 91.5 2e-13 >seq17013 Length=6145 Score = 107 bits (118), Expect = 2e-18 Identities = 192/278 (69%), Gaps = 2/278 (1%) Strand=Plus/Minus Query 14152 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGG 14211 ||| |||||||| || ||||| | |||||| || |||||||| | |||||||||| || Sbjct 1413 AAAACCATCCATTTCTGTCAACAATTGATTAATAGTTTGTTCCCTTTCATCATTCCCACC 1354 Query 14212 CATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACA 14271 | ||| |||| | ||| | ||||| || || |||||||| ||||| || || || Sbjct 1353 ACCAAGACCTGCACCTCTTTGTCTTCCGACTGCATCTATTTCATCAATGAACACAATGCA 1294 Query 14272 TGGTTGATTTTCACGG-GCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCA 14330 ||| | |||| | || |||||| | ||| | ||||| ||||| ||||||| Sbjct 1293 AGGT-GCTTTTGATTTCGCCTTTTCAAACAAATCCCTAACTCTAGATGCACCAACACCCA 1235 Query 14331 CAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCACCCG 14390 |||| | ||| || || | | || | |||| || || || || || ||| || | Sbjct 1234 CAAATAACTCAACGAATTCTGATGCAGCACATGAGAAAAATGGCACACCAGCTTCTCCGG 1175 Query 14391 CGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGT 14428 | | || | || | ||||||||||| || |||||| Sbjct 1174 CCACCGCCCTAGCCAAAAGGGTCTTCCCGGTTCCTGGT 1137 >seq48246 Length=4099 Score = 104 bits (114), Expect = 3e-17 Identities = 180/260 (69%), Gaps = 9/260 (3%) Strand=Plus/Plus Query 130016 GCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 130075 ||||| || ||| | ||||| || || ||||| | ||| ||||||||| | || Sbjct 1580 GCAAAATCACAGTGTAATCCCTCATCTCGCGAGATTAATTCGTTCGAGAAGGTTAATCCA 1639 Query 130076 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 130135 ||||| | || || ||||||||||| |||||||| || || || || ||||| ||| Sbjct 1640 GGCATCAACCCACGTTTCTTCAACCAAAAAATCGCGCAGAAGCTTCCGGAAAAGAAAATC 1699 Query 130136 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGG--AGCGGGACTTTGTATCAA 130193 || || || || ||||| || | | |||||| ||||| | || | | ||| | Sbjct 1700 CCTTCAACGCAAGCGAAAGCGATAATACGCTCTGCAAACGTCTCCGAGCC-----ATCGA 1754 Query 130194 ACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAA 130253 ||| || | ||||| | ||| || ||||| | |||||| | |||| ||| ||| | Sbjct 1755 TCCATTTGAGAGCCCAATTCGCTTTCTTCTCAACACACGGAATAGTCTCGATTGCTCGGA 1814 Query 130254 AGAGTTCCTTCTTTTCTGAT 130273 ||||| || ||||||| || Sbjct 1815 AGAGT--CTGCTTTTCTCAT 1832 >seq107321 Length=2628 Score = 102 bits (112), Expect = 1e-16 Identities = 183/263 (70%), Gaps = 7/263 (3%) Strand=Plus/Minus Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086 ||| | ||||||||| || ||||| | ||| |||||||| || |||||||| || || Sbjct 1280 GTGCAAACCCTCGTCTCGCGAGATCAATTCGTTCGAGAATGTTAGCCCTGGCATAAGCCC 1221 Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 130146 || || || | |||||| || || || || ||| ||||||||||| || || || || Sbjct 1220 TCGTTTTTTGAGCCAGAATATGGCGCAGAAACTGCCGGAGAAGAAGATACCTTCGACGCA 1161 Query 130147 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGC 130206 ||||| || | || || || || |||| || | ||| | ||| | | || Sbjct 1160 AGCGAAAGCGATGATCCGTTCTGCGAAGGTTTCAGA---TCCATCGATCCATCTGAGGGC 1104 Query 130207 CCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTT 130266 ||| | || || |||| ||| || |||| ||| | ||| || ||| || ||| || Sbjct 1103 CCATTTAGCTTTCTTCTGGATGCAAGGGATGGTATCGATTGCGCGAAACAG--CCTACTC 1046 Query 130267 TTCT-GATGGA-TCTTTGATGTA 130287 |||| | |||| ||||||||||| Sbjct 1045 TTCTCGTTGGAGTCTTTGATGTA 1023 >seq6274 Length=8207 Score = 91.5 bits (100), Expect = 2e-13 Identities = 149/212 (70%), Gaps = 7/212 (3%) Strand=Plus/Plus Query 119117 CAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC 119176 ||| || | ||| || | |||||| || ||||| ||||||| || || || | || || Sbjct 4822 CAAATCAAGAAACTCAAAGATATCAGCATGCCATGGTTCCAAATAAACAGCAAATGCACC 4881 Query 119177 CTTACG---ACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCAT 119233 ||| | || ||| | |||| ||||| | |||||| | ||||| ||||| | ||| Sbjct 4882 CTTTCTTTTACCACCTCCTTGGTCAACATATCGAGCAGTGTCATTAAACACACGCAACAT 4941 Query 119234 TGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTT--ATTGGCTCTG 119291 |||||| ||||||| ||| |||||||| || || || | |||| | | |||||| Sbjct 4942 TGGAATAATACCATTAGATGTTCCATTTGTGCCACGTAT--GTAACTTCCAGTTGCTCTG 4999 Query 119292 ACATCGTGGATGTGCATACCAATACCCCCTGC 119323 | || || | | ||||||||||||||| Sbjct 5000 ATATTATGCACAGAGACACCAATACCCCCTGC 5031 >seq1209 Length=11671 Score = 91.5 bits (100), Expect = 2e-13 Identities = 224/335 (67%), Gaps = 6/335 (2%) Strand=Plus/Minus Query 14096 TCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAG 14155 ||||| |||||| || || || || || | |||| || ||||| | ||||| Sbjct 2617 TCAAGAATATCAGCACGATTAGTAGCTGCAACAACAATAATACCCGTATTCCCTTCAAAT 2558 Query 14156 CCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGCATA 14215 |||||||| |||||||| || ||||| | || ||||| | |||||||||| || | | Sbjct 2557 CCATCCATTTCAGTCAAAAGCTGATTCAATGTCTGTTCCCTTTCATCATTCCCA--CCTC 2500 Query 14216 CCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATG 14273 | | || | | | ||| | || || || ||||| ||||| | || || ||||| | Sbjct 2499 CAATTCCAGTTCCTCTTTGTCTCCCAACTGCATCAATCTCATCAACAAACACAATACACG 2440 Query 14274 GTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAA 14333 | ||| || || || ||| | ||| | ||||||| || || ||||| |||| Sbjct 2439 GAGCATTCTCTTTTGCCTTTTTAAACAAATCCCTCACTCTCGAAGCCCCAACACCAACAA 2380 Query 14334 ACATCTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTAGATTCACCCGCG 14392 ||||||| ||||| | | ||||| || | | || ||||| | ||| ||||| Sbjct 2379 ACATCTCAACAAATTCCGACCCGGAA-ATCGAAAAAAACGGGACCCCCGCTTCCCCCGCA 2321 Query 14393 ATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 14427 || || || || || || ||||| ||||| || Sbjct 2320 ATCGCCTTCGCCAGAAGAGTTTTCCCGGTCCCGGG 2286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611662484211600