Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq17013 125 8e-24 seq1209 123 3e-23 seq29544 98.7 1e-15 seq169967 95.1 1e-14 seq107321 95.1 1e-14 seq6274 89.7 6e-13 >seq17013 Length=6145 Score = 125 bits (138), Expect = 8e-24 Identities = 209/295 (71%), Gaps = 8/295 (3%) Strand=Plus/Minus Query 9613 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9672 |||||||||||| |||||||| | ||| |||||||||||||||| |||||||||| | Sbjct 1413 AAAACCATCCATTTCTGTCAACAATTGATTAATAGTTTGTTCCCTTTCATCATTCCCACC 1354 Query 9673 CATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 9732 | ||| |||| | ||| |||| || ||||| || ||||||||||| || ||||| Sbjct 1353 ACCAAGACCTGCACCTCTTTGTCTTCCGACTGCATCTATTTCATCAATGAACACAATGCA 1294 Query 9733 TGGTTGATTTTCGCGAGCGAC--TTCAAAGAGATCCCGTACACGCTTG--GCGCCCACAC 9788 || || |||| | || | |||||| | ||||| || || || | || || |||| Sbjct 1293 AGG-TGCTTTT-GATTTCGCCTTTTCAAACAAATCCC-TA-ACTCTAGATGCACCAACAC 1238 Query 9789 CAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCAC 9848 | ||||| | ||| || || | || || | |||| || || || ||| || ||| | Sbjct 1237 CCACAAATAACTCAACGAATTCTGATGCAGCACATGAGAAAAATGGCACACCAGCTTCTC 1178 Query 9849 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAG 9903 | || | || | || | ||| ||||| || || ||||| ||| ||||||| Sbjct 1177 CGGCCACCGCCCTAGCCAAAAGGGTCTTCCCGGTTCCTGGTGGTCCCACGAGGAG 1123 >seq1209 Length=11671 Score = 123 bits (136), Expect = 3e-23 Identities = 243/352 (69%), Gaps = 8/352 (2%) Strand=Plus/Minus Query 9556 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGT-TTCATTATCAA 9614 |||||| |||||| | ||||| || || || | |||| |||||| || ||| | |||| Sbjct 2618 ATCAAGAATATCAGCACGATTAGTAGCTGCAACAACAATAATACCCGTATTCCCT-TCAA 2560 Query 9615 AACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCA 9674 | |||||||| || |||||||| || || | || ||||||| |||||||||| | | Sbjct 2559 ATCCATCCATTTCAGTCAAAAGCTGATTCAATGTCTGTTCCCTTTCATCATTCCCA--CC 2502 Query 9675 TACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 9732 | | | |||| | | ||| | || || |||||||||||||||| || || || || Sbjct 2501 TCCAATTCCAGTTCCTCTTTGTCTCCCAACTGCATCAATCTCATCAACAAACACAATACA 2442 Query 9733 TGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAAC 9792 || ||| || || || ||| | ||||| || | | || || |||||||| Sbjct 2441 CGGAGCATTCTCTTTTGCCTTTTTAAACAAATCCCTCACTCTCGAAGCCCCAACACCAAC 2382 Query 9793 AAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCG 9851 ||||||||| ||||| | | ||||| || | | || ||||| | ||| |||| Sbjct 2381 AAACATCTCAACAAATTCCGACCCGGAA-ATCGAAAAAAACGGGACCCCCGCTTCCCCCG 2323 Query 9852 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAG 9903 |||| || || |||||||| || || || || ||| ||| |||| || Sbjct 2322 CAATCGCCTTCGCCAGAAGAGTTTTCCCGGTCCCGGGCGGGCCCACGAGAAG 2271 >seq29544 Length=5055 Score = 98.7 bits (108), Expect = 1e-15 Identities = 201/289 (70%), Gaps = 10/289 (3%) Strand=Plus/Plus Query 7361 AATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAACCATGAATCA 7420 |||||| | || | ||||| | || || ||| || || ||||||||||| |||||| Sbjct 2187 AATTACAGGGAAGCATACGGGATCTTCGCCTGCAATGGCATTCTCTTCAACCACGAATCA 2246 Query 7421 CCGAGACGAGGTGCAGACTTTGTCACAAAGAAGATTACCGAGGGTATCAAACA-AATCAT 7479 || || |||||| | |||||||||| | ||||| | | |||| | | || |||| Sbjct 2247 CCACGAAGAGGTGAAAACTTTGTCACCAGAAAGATCA-CAAGGGCAGTAGGCAGGATCAA 2305 Query 7480 GAAGGG--TGAAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGCGAGAGATTGGGGT 7537 || || || |||| | ||| ||||| || || | || | |||||||||||| Sbjct 2306 GATCGGTCTGCAAAGCAAACTATT--CTTGGGGAATTTACAAGCTTCAAGAGATTGGGGT 2363 Query 7538 CACGCGAAGGACTATGTTGAAGCTATGTGGCTCATGCTTCAACAAGAGGAAGCC-GACGA 7596 || |||||| || ||||| |||||| | ||||| || || || ||||| || || Sbjct 2364 TTTGCAGGGGACTACGTGGAAGCAATGTGGTTGATGCTACAGCAGGA-TAAGCCAGATGA 2422 Query 7597 ATATGTAGTAGCAACGGGTGAGACCCATACAGT-GAGGCGGTTCATTGA 7644 ||||| || ||||| | || | || ||||| |||| | ||| |||| Sbjct 2423 CTATGTGGTGGCAACTGAGGAATCACACACAGTGGAGGAGTTTC-TTGA 2470 >seq169967 Length=1880 Score = 95.1 bits (104), Expect = 1e-14 Identities = 275/413 (67%), Gaps = 18/413 (4%) Strand=Plus/Minus Query 9485 TCGCGTCCCCGAACACTTGGGAGAGCTACTTGGATCTTACGATCAAAGCGACCTGGACGA 9544 || ||||| |||| | ||| || | ||| | | ||||||||| ||||| ||||| Sbjct 967 TCTCGTCCACGAATATCTGGAAGCGGTACAATAACTTGACGATCAAAACGACCGGGACGT 908 Query 9545 AGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTT 9604 | | || ||| | | |||| | ||| || || || || | || || ||| Sbjct 907 AATAAAGCAGGATCTAAAACATCAGGTCTATTAGTAGCAGCTATTAAAATAACACCC--- 851 Query 9605 TCATT---ATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCA 9661 ||||| |||||| |||||||| ||| || | ||| |||| || || || | |||| Sbjct 850 TCATTTCCATCAAATCCATCCATTTCTACTAACATTTGATTAAGTGTCTGCTCTCTTTCA 791 Query 9662 TCAT-TCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAAT 9720 |||| || | || ||||||| | ||| ||| || |||||||| |||||||| Sbjct 790 TCATGTCCACCACCTAAT-CCAGCACCTCTTTGACGTCCTACAGCATCAATTTCATCAAT 732 Query 9721 GAAGACGATGCATGGTT--GATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTG 9778 || | || || ||| ||||||| || | |||||| | ||||| ||| | ||| Sbjct 731 AAAAATTATACAAGGTGCAGATTTTCTTGAATG--TTCAAACATATCCCTTACTC--TTG 676 Query 9779 --GCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGG 9835 || ||||| ||||||||||| || ||||| | | | ||| |||| | || || Sbjct 675 AAGCTCCCACTCCAACAAACATTTCAACAAAATCAGAACCAGAA-ATTGTAAAAAAAGGT 617 Query 9836 ACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888 || |||| ||| || || || ||| || || | || ||||| ||||| || Sbjct 616 ACTTTAGCTTCTCCAGCTATAGCTTTTGCAAGTAATGTTTTACCAGTACCAGG 564 >seq107321 Length=2628 Score = 95.1 bits (104), Expect = 1e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 94796 CCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCT 94855 |||| || || || || |||| || || || || || |||||||||||||| || | Sbjct 1132 CCTTCGCAGAACGGATCATCGCTTTCGCTTGCGTCGAAGGTATCTTCTTCTCCGGCAGTT 1191 Query 94856 TCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACG 94915 ||||||| || | |||||||| || ||||| || |||||||| || ||||| |||| Sbjct 1192 TCTGCGCCATATTCTGGCTCAAAAAACGAGGGCTTATGCCAGGGCTAACATTCTCGAACG 1251 Query 94916 AGCTTATCTCTCGTGACGAGGG 94937 | | ||||| || |||||||| Sbjct 1252 AATTGATCTCGCGAGACGAGGG 1273 >seq6274 Length=8207 Score = 89.7 bits (98), Expect = 6e-13 Identities = 159/227 (70%), Gaps = 4/227 (2%) Strand=Plus/Minus Query 104141 GACTACGACTTTGGTTATTTTGGTCTCAAAACCCTTGAGAAGAGCTATCTTCAACGGCTC 104200 |||| |||| || ||||||||| ||||||||||||| | | ||||| | | | Sbjct 5433 GACTTTGACTATGATTATTTTGGATTCAAAACCCTTGAAAGGTCTTATCTCTTAAAGATA 5374 Query 104201 GATGGTG-TCTTGATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCA 104259 || || | ||| |||||| || || | ||| | ||| | || || | || ||||| Sbjct 5373 GAAGGAAATGTTG-TGGAAAGGCCTCAACATATGCTGATGAGAGTTGCAGTTGGGATTCA 5315 Query 104260 TGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCA 104318 | ||||||||||||||||| | | ||||| | ||||| || |||| ||||| Sbjct 5314 TAAAGAAGACATTGATTCTGTAATCAAAACATATCATTTAATGTCACAGAGGTG-GTTCA 5256 Query 104319 TTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAA 104365 ||| || | || ||||| ||||||||||| ||||| || || ||| Sbjct 5255 CTCATGCTTCTCCCACCCTTTTCAATGCTGGAACACCCAGGCCTCAA 5209 Score = 87.8 bits (96), Expect = 2e-12 Identities = 115/159 (72%), Gaps = 3/159 (2%) Strand=Plus/Minus Query 104507 ATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCC 104566 || || || |||||||| ||| ||||||||||||||||| | || || ||||| | | Sbjct 4980 ATACGTGGCACAAATGGAACATCTAATGGTATTATTCCAATGTTGCGTGTGTTTAATGAC 4921 Query 104567 ACAGCGCGCTATGTAAATCAAGCTGGGCGT---CGAAAGGGATCTATCGCAGTCTATCTT 104623 || || || ||||| | |||| || || ||||||| | | || || ||| | Sbjct 4920 ACTGCTCGATATGTTGACCAAGGAGGTGGTAAAAGAAAGGGTGCATTTGCTGTTTATTTG 4861 Query 104624 GAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTG 104662 || |||||||| || |||||| | ||||| ||||| ||| Sbjct 4860 GAACCATGGCATGCTGATATCTTTGAGTTTCTTGATTTG 4822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576873292256400