Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq107321 145 8e-30 >seq107321 Length=2628 Score = 145 bits (160), Expect = 8e-30 Identities = 358/530 (68%), Gaps = 20/530 (4%) Strand=Plus/Plus Query 59593 TGTATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACC 59652 |||| || ||||| | |||||| ||| | | |||||| |||| | | |||| Sbjct 754 TGTACAAAAAAGCAGAAGCTTCATTTTGGACGGCGGAGGAGGTTGATTTGTCACAGGACC 813 Query 59653 TGAAGGATTGGGACAAGCTCAATTACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCT 59712 | | |||||||| || | | | |||| | | ||||||| ||||| || | Sbjct 814 AGCGTCAGTGGGACAACCTAAGCGATGGCGAGAGGTACTTCATCACTCACGTCCTCGCAT 873 Query 59713 TCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATATAGACATGAACTTTTCC--AAGGA 59770 ||||||| || |||||||| || ||||||| | | | | || ||| || || Sbjct 874 TCTTCGCCGCCTCCGATGGAATCGTATTGGAAAACCTCGCC--GGACGGTTCATGAAAGA 931 Query 59771 TGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCAG-TCGTTCAA-CGAGTCTATC 59828 ||||| |||| ||||| || | ||||||| | ||| ||| ||| |||| ||| Sbjct 932 GGTCCAAGTTGCGGAGGCGCGTGCCTTCTACGGATTCCAGATCG--CAATCGAGAACATC 989 Query 59829 CACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCT 59888 |||||||||| |||| || | |||| | |||| || | | |||||| | Sbjct 990 CACTCCGAGATGTACAGTCTGCTTCTCGAATCATACATCAAAGACTCCAACGAGAAGAGT 1049 Query 59889 GGTCTGTTCCGTGCCATAGAGACG-TCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCAT 59947 | ||||| || || || || || |||| ||| | | | ||||| |||||||| | Sbjct 1050 AGGCTGTTTCGCGCAATCGATACCATCCCTTGCATCCAGA-AGAAAGCTAAATGGGCCCT 1108 Query 59948 GCAG-TGGAT-GAGTCCTGGAGC---ATCATTTGCACAACGTCTCATAGCTTTTGCATGC 60002 ||| ||||| || |||| | | | || ||| |||| |||| ||||| || ||| Sbjct 1109 -CAGATGGATCGA----TGGATCTGAAACCTTCGCAGAACGGATCATCGCTTTCGCTTGC 1163 Query 60003 GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGC 60062 || ||||| ||||||||||| ||| ||||| || || |||||||||||||| || || Sbjct 1164 GTCGAAGGTATCTTCTTCTCCGGCAGTTTCTGCGCCATATTCTGGCTCAAAAAACGAGGG 1223 Query 60063 CTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGG 60112 || ||||| || || | ||||| ||||| |||| || || |||||||| Sbjct 1224 CTTATGCCAGGGCTAACATTCTCGAACGAATTGATCTCGCGAGACGAGGG 1273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542517699218400