Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq107321 129 6e-25 seq48246 98.7 1e-15 seq336222 86.0 7e-12 seq84918 84.2 2e-11 >seq107321 Length=2628 Score = 129 bits (142), Expect = 6e-25 Identities = 368/551 (67%), Gaps = 30/551 (5%) Strand=Plus/Minus Query 74784 ATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATG 74843 |||||||| ||||| || | || || |||||||| || || || || | ||| || ||| Sbjct 1258 ATCAATTCGTTCGAGAATGTTAGCCCTGGCATAAGCCCTCGTTTTTTGAGCCAGAATATG 1199 Query 74844 GCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGC 74903 || ||||| || ||||||||| |||||||| || || || |||| | |||| Sbjct 1198 GCGCAGAAACTGCCGGAGAAGAAGATACCTTCGACGCAAGCGAAAGCGATGATCCGTTCT 1139 Query 74904 GCGAACGGTGCATCGGAAGTCATCCAAGTCTGAG--CCCATTCAGCTTTTCGTTTGACCG 74961 ||||| | | || | ||||| |||||| |||||| |||||| | | || | Sbjct 1138 GCGAAGGTTTCAGATCCATCGATCCA--TCTGAGGGCCCATTTAGCTTT-CTTCTGGATG 1082 Query 74962 CA-GGGACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGC 75020 || |||| |||||||| || | || || || |||||| | || || |||| | Sbjct 1081 CAAGGGATGGTATCGATTGCGCGAAACAGCCTACTCTTCTCGTTGGAGTCTTTGATG--- 1025 Query 75021 TTGTCAATC-ATAAGT-GA--GTACGTCTCCGAATGAATCGACTCG-TTGAACGA-CTGG 75074 | | | || | ||| || |||| |||| || || || |||| ||| ||| |||| Sbjct 1024 -TATGATTCGAGAAGCAGACTGTACATCTCGGAGTGGATGTTCTCGATTG--CGATCTGG 968 Query 75075 TACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTT--TGAAAAATTCATGTCGA 75132 | ||||||| | |||||||| |||| || || || || |||| | | | ||| Sbjct 967 AATCCGTAGAAGGCACGCGCCTCCGCAACTTGGACCTCTTTCATGAACCGTCC--GGCGA 910 Query 75133 TATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGT 75192 || |||| ||||| || || ||||||||||| || || || || |||| |||| Sbjct 909 GGTTTTCCAATACGATTCCATCGGAGGCGGCGAAGAATGCGAGGACGTGAGTGATGAAGT 850 Query 75193 GGCGCTCATCGTCAGTGAGTTTGTCCCAATCCTTCAGGTCCCCCGCCAAATCAATCTCCT 75252 | ||| | || | || |||||||| | | ||||| | |||||||| ||||| Sbjct 849 ACCTCTCGCCATCGCTTAGGTTGTCCCACTGACGCTGGTCCTGTGACAAATCAACCTCCT 790 Query 75253 CGACCGTCCA----GAAACTCCCAATCGCCTTTTTGTACAAAGACCACAAGTCAGGGTAA 75308 | ||||||| ||| || | || |||||||||| ||| | | |||||| Sbjct 789 CCGCCGTCCAAAATGAAGCTTC----TGCTTTTTTGTACATTTCCCAGATCTGAGGGTAT 734 Query 75309 TTGATTGGAAA 75319 | |||||| || Sbjct 733 TGGATTGGGAA 723 >seq48246 Length=4099 Score = 98.7 bits (108), Expect = 1e-15 Identities = 358/545 (66%), Gaps = 18/545 (3%) Strand=Plus/Plus Query 74784 ATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATG 74843 || ||||| ||||| || | | |||||||| | ||||| |||||||||||||| || Sbjct 1613 ATTAATTCGTTCGAGAAGGTTAATCCAGGCATCAACCCACGTTTCTTCAACCAAAAAATC 1672 Query 74844 GCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGC 74903 || |||||| || ||||| || ||||| || || || || |||| || || | Sbjct 1673 GCGCAGAAGCTTCCGGAAAAGAAAATCCCTTCAACGCAAGCGAAAGCGATAATACGCTCT 1732 Query 74904 GCGAACGGTGCATCGGAAGTCATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCA 74963 || |||| | | | ||||| | ||||||| | || |||| | | | | || Sbjct 1733 GCAAACGTCTCCGAGCCATCGATCCATTTGAGAGCCCAATTCGC-TTTCTTCTCAACACA 1791 Query 74964 -GGGACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACG-AGCT 75021 || | ||| ||||| ||| ||||||| || ||||| | | ||||| | | || Sbjct 1792 CGGAATAGTCTCGATTGCTCGGAAGAGTCTGCTTTTCTCATTAGAGTCCTTTATGTAGGA 1851 Query 75022 TGTC--AATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGTTGAACGACTGGTACGC 75079 | | || || || | |||| |||| || || || |||| || |||| | | Sbjct 1852 TTCCAGAAGCA-AACT--GTACATCTCGGAGTGGATATTCTCGATGGCAATCTGGAATCC 1908 Query 75080 GTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTTTGAAAAAT--TCATGTCGATATTC 75137 |||||| | |||||||| |||| || || | |||| | ||| || | | | || Sbjct 1909 GTAGAAGGCACGCGCCTCCGCAACTTGAACCT-CTTTCATGAATCGTC-CGGCTAGGTTT 1966 Query 75138 TCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGC 75197 |||| |||||||| || ||||||||||| || || || || |||||||||| | | Sbjct 1967 TCCAAAACGATGCCATCGGAGGCGGCGAAGAAGGCAAGGACGTGAGTGATAAAGTGCCTC 2026 Query 75198 TCATCGTCAGTGAGTTTGTCCCAAT--CCTTCAGGTCCCCCGCCAAATCAATCTCCTCGA 75255 || |||| || | |||||| | | || | || | | |||||| | ||| ||| Sbjct 2027 TCGCCGTCTGTCAACGAGTCCCAGTGACGTT--GATCTTCAGACAAATCGACCTCTTCGG 2084 Query 75256 CCGTCCAGAAACTCCCAATCGCCTTT-TTGTACAAAGACCACAAGTCAGGGTAATTGATT 75314 | ||||| |||| ||| |||| ||||||| ||| | | |||||| | ||| Sbjct 2085 CTGTCCA-AAACGAAGCTTCGGCTTTCTTGTACATTTCCCAAATTTGAGGGTACTGAATT 2143 Query 75315 GGAAA 75319 || || Sbjct 2144 GGGAA 2148 >seq336222 Length=976 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||| ||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 174 TGCTCTCGTTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 233 Query 79684 TGAGCTACGAAAGC 79697 |||||||||| ||| Sbjct 234 TGAGCTACGAGAGC 247 >seq84918 Length=3042 Score = 84.2 bits (92), Expect = 2e-11 Identities = 65/76 (86%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 338 TGCTTTCATTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 397 Query 79684 TGAGCTACGAAAGCAA 79699 ||||||| |||||||| Sbjct 398 TGAGCTATGAAAGCAA 413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 541223232378000