Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_028448.1 Length=167467 Score E Sequences producing significant alignments: (Bits) Value seq159469 228 9e-55 seq30067 215 5e-51 >seq159469 Length=1977 Score = 228 bits (252), Expect = 9e-55 Identities = 311/433 (72%), Gaps = 6/433 (1%) Strand=Plus/Plus Query 81518 TAATCCATATGACGAATGCGGTTTTCTTCTACGCCTTTGTTATTTTTCAAAACGAGAAGA 81577 ||||| |||||||| | | |||||||| | ||| | |||||||| ||||| | | | Sbjct 1307 TAATCAATATGACGCACTCTATTTTCTTCAATTCCTCTATTATTTTTTAAAACTAATAAA 1366 Query 81578 TTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCGCCGCCACGAATTCCA 81637 |||||||||| |||||||| || |||||| || ||| ||||| || || | | ||| Sbjct 1367 CTTTCAACTTCAAAATGCCATATTGGATAAAAAATAGTTGCAGCTCCTCCTCTCACTCCG 1426 Query 81638 CCCTGTGAACATGATTTAACTGCAGTCTGAAAATGTTTCCAAAAAGGAATAACACCAGTA 81697 || |||||||| ||||| || ||| | ||||| ||||| ||||||| ||| ||||||| Sbjct 1427 CCTTGTGAACAGGATTTTACGGCACTTTGAAAGTGTTTATAAAAAGGTATACAACCAGTA 1486 Query 81698 TGGCGTACTTCACCCATGCCAATCTTAGAACCTTCAGCACGAATCATACCTACGTTAATT 81757 || | ||||||| | | ||| | ||| || ||||| || | ||||| Sbjct 1487 TGAAATGCTTCACCGTTTCTAATAGGACTTCCTAACGCGCGAATTTGTCCCGCATTAATA 1546 Query 81758 CCAATTCCAGCGCGTTTAGAAATATATTCAACAATTGA---AGCAGAAGCTTTATTAATT 81814 || |||||||| |||| || | ||||| |||||| || || || ||| |||||| Sbjct 1547 CCGATTCCAGCACGTTGTGATACATATTTAACAATAGAGCTAGTAGTAGC---ATTAATA 1603 Query 81815 GACTTCAATGAATCACCAGCTTCAATAACAACGCATGAACTAAACTGTCGAGTCGGAGTA 81874 || || || |||| || ||| || | ||| || ||||||||||| ||||| ||||| Sbjct 1604 GAGTTTAAATTATCAGCACATTCGATTAAAACACAAGAACTAAACTGACGAGTAGGAGTT 1663 Query 81875 CGGCAACCAGCCATAATAGGAGTTGGCAATGAAATCTGTCGAGTAGATACTGCTTCATAA 81934 || |||| |||||| || ||||| |||||||| | |||||| | ||| | |||| Sbjct 1664 CGTACTCCAGACATAATGGGTGTTGGTAATGAAATTTTAAAAGTAGAAATTGCATTATAA 1723 Query 81935 AAACGAATAACAT 81947 ||||| ||| || Sbjct 1724 AAACGCTTAATAT 1736 >seq30067 Length=5021 Score = 215 bits (238), Expect = 5e-51 Identities = 326/464 (70%), Gaps = 0/464 (0%) Strand=Plus/Minus Query 81493 CATCAAATCATTCAGCTGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACGCC 81552 ||| || | ||| | |||| |||| || | |||||| | | |||||||| | || Sbjct 3727 CATGAATTTATTAATTTGAATTGCATAGTCGACATGACGTACTCTATTTTCTTCAATTCC 3668 Query 81553 TTTGTTATTTTTCAAAACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGC 81612 |||| ||||| ||||| | | |||||||||||| |||||||| || |||||| || Sbjct 3667 CCTGTTGTTTTTTAAAACTAATAAATTTTCAACTTCAAAATGCCATATTGGATAAAAAAT 3608 Query 81613 AGTAGCAGCGCCGCCACGAATTCCACCCTGTGAACATGATTTAACTGCAGTCTGAAAATG 81672 ||| ||||| || || | || || || || ||||| ||||| || || | |||||||| Sbjct 3607 AGTTGCAGCTCCACCTCTAACACCTCCTTGAGAACAAGATTTTACAGCGCTTTGAAAATG 3548 Query 81673 TTTCCAAAAAGGAATAACACCAGTATGGCGTACTTCACCCATGCCAATCTTAGAACCTTC 81732 ||| ||||||| ||| ||||||||| | |||| || | | ||| | ||| Sbjct 3547 TTTATAAAAAGGTATACAACCAGTATGAAATGCTTCTCCGTTTCTAATAGGACTTCCTAA 3488 Query 81733 AGCACGAATCATACCTACGTTAATTCCAATTCCAGCGCGTTTAGAAATATATTCAACAAT 81792 || ||||| ||| | ||||| ||||||||||| |||| |||| ||||| |||||| Sbjct 3487 TGCGCGAATTTGTCCTGCATTAATACCAATTCCAGCACGTTGGGAAACATATTTAACAAT 3428 Query 81793 TGAAGCAGAAGCTTTATTAATTGACTTCAATGAATCACCAGCTTCAATAACAACGCATGA 81852 || || | |||||| || || || |||| || |||||| | ||| || || Sbjct 3427 AGAGCTAGTTGTCGCATTAATGGAATTTAAATTATCAGCACATTCAATTAAAACACAAGA 3368 Query 81853 ACTAAACTGTCGAGTCGGAGTACGGCAACCAGCCATAATAGGAGTTGGCAATGAAATCTG 81912 |||||| || ||||| ||||| | | |||| |||||| || ||||| |||||||| | Sbjct 3367 ACTAAATTGACGAGTAGGAGTTCTGACTCCAGACATAATTGGTGTTGGTAATGAAATTTT 3308 Query 81913 TCGAGTAGATACTGCTTCATAAAAACGAATAACATGTTTTAATC 81956 |||||| | || | ||||||||| || || |||| || Sbjct 3307 AAAAGTAGAAATAGCATTGTAAAAACGATGAATATAATTTATTC 3264 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 529899021241200