Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_028663.1 Length=188632 Score E Sequences producing significant alignments: (Bits) Value seq64520 426 2e-114 seq836247 174 2e-38 seq147675 170 2e-37 seq533404 156 5e-33 seq188 134 2e-26 seq81374 113 5e-20 seq10361 95.1 1e-14 seq71880 87.8 2e-12 seq348021 86.0 7e-12 seq59682 84.2 3e-11 >seq64520 Length=3547 Score = 426 bits (472), Expect = 2e-114 Identities = 560/773 (72%), Gaps = 2/773 (0%) Strand=Plus/Minus Query 176147 TTTACGTTGGTTGGTTTGGTGTGCTCATGATTCCATGTCTGCTCACTGCTGCAGCATGT- 176205 ||||| |||| ||||||||||| | ||||| || | | || || | | ||| Sbjct 772 TTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTC-TGTA 714 Query 176206 TTTATCGTTGCATTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTA 176265 ||||| | || || ||||| || || || || ||||| || |||||||| ||||| || Sbjct 713 TTTATTATCGCCTTCATTGCTGCTCCTCCAGTGGATATTGATGGTATTCGTGAACCTGTT 654 Query 176266 GCAGGATCTCTACTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAAC 176325 | ||||||||||| ||||||||||| || || ||||| || | | || | || Sbjct 653 TCTGGATCTCTACTTTATGGAAACAATATTATTTCAGGTGCCATTATTCCTACTTCTGCA 594 Query 176326 GCAATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTAC 176385 || || || | || || |||||||| |||||||||||| | ||||| |||||| | ||| Sbjct 593 GCTATAGGTTTGCATTTTTACCCAATATGGGAAGCAGCATCCGTTGATGAATGGTTATAC 534 Query 176386 AATGGAGGACCATACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTTACATG 176445 ||||| || || || |||| |||| | |||||| | | ||| | | ||||||| Sbjct 533 AATGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATG 474 Query 176446 GGACGCCAATGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATAC 176505 || || | ||||| ||||||| | | || || ||||| |||||||| ||||||||| Sbjct 473 GGTCGTGAGTGGGAGCTTAGTTTCCGTCTGGGTATGCGACCTTGGATTGCTGTTGCATAT 414 Query 176506 TCTGCACCAGTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATCT 176565 || || || || | || |||| || |||||| | |||| ||| | ||||||||| Sbjct 413 TCAGCTCCTGTTGCAGCTGCGACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGC 354 Query 176566 TTCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAA 176625 || ||||||||||||||||| || ||||| ||||| |||||||| ||| |||||||||| Sbjct 353 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 294 Query 176626 GCAGAGCACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGT 176685 || ||||||||||| || ||||||||||| || ||||| || ||||| ||||| || || Sbjct 293 GCTGAGCACAACATCCTTATGCACCCATTTCACATGCTAGGCGTAGCTGGTGTATTCGGC 234 Query 176686 GGATCTCTTTTCTCAGCAATGCACGGAAGTCTTGTTACTTCTTCACTTGTTAGAGAGACA 176745 || || || || || ||||| || | | || || ||| | | || || || Sbjct 233 GGCTCCCTATTTAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGATCAGGGAAACC 174 Query 176746 ACCGAAAACGAATCACAAAACTACGGTTACAAATTCGGACAAGAAGAAGAGACATACAAC 176805 || ||||| ||||| || | ||||||| |||||| ||||||||||| || || || Sbjct 173 ACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAAGAAACTTATAAT 114 Query 176806 ATTGTAGCTGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAATAAC 176865 || ||||| || || ||||| ||||| || | |||||||| |||||| |||||| ||| Sbjct 113 ATCGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAAC 54 Query 176866 TCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTGGTT 176918 || | | | || |||||||| || || | || || || | |||||||| Sbjct 53 TCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTT 1 >seq836247 Length=317 Score = 174 bits (192), Expect = 2e-38 Identities = 218/299 (73%), Gaps = 0/299 (0%) Strand=Plus/Plus Query 176569 TCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAAGCA 176628 ||||||||||||||||| | |||| ||||| |||||||| ||| |||||||||| || Sbjct 3 TCTGATGGTATGCCTCTAAGAATTTATGGTACTTTCAACTTCATGATTGTATTCCAGGCT 62 Query 176629 GAGCACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGTGGA 176688 ||||||||||| || ||||||||||| || ||||| | ||| | ||| |||| || Sbjct 63 GAGCACAACATCCTTATGCACCCATTTCACATGCTATGCGTAACTATTGTATTTGACGGC 122 Query 176689 TCTCTTTTCTCAGCAATGCACGGAAGTCTTGTTACTTCTTCACTTGTTAGAGAGACAACC 176748 || || || || ||||| || | | || || ||| | | || || || || Sbjct 123 TCCCTATTTAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGATCAGGGAAACCACA 182 Query 176749 GAAAACGAATCACAAAACTACGGTTACAAATTCGGACAAGAAGAAGAGACATACAACATT 176808 ||||| |||| || | ||||||| |||| | ||||||||||| || || || || Sbjct 183 GAAAATAAATCTGCTAATGAAGGTTACATATTCAGTCAAGAAGAAGAAACTTATAATATC 242 Query 176809 GTAGCTGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAATAACTC 176867 ||||| || || ||||| ||||| || | |||||||| |||||| |||||| | ||| Sbjct 243 GTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAGCTC 301 >seq147675 Length=2096 Score = 170 bits (188), Expect = 2e-37 Identities = 169/216 (78%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 176440 TACATGGGACGCCAATGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGT-GT 176498 || ||||| || | ||||| ||||||| | ||||| ||||| ||||||| |||| || Sbjct 1507 TATATGGGTCGTGAGTGGGAGCTTAGTTTCCATCTAGGTATGCGACCTTGGA-CTGTTGT 1449 Query 176499 TGCATACTCTGCACCAGTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCA 176558 |||||| || || || || | || |||| || ||||| | |||| | | | ||||| Sbjct 1448 TGCATATTCAGCTCCTGTTACAGCTGCGACTGCTATTTTCTTGATCTACCTAATTGGTCA 1389 Query 176559 AGGATCTTTCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGT 176618 |||| || ||||||||||||||||| || ||||| ||||| |||||||| ||| |||| Sbjct 1388 AGGAAGCTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGT 1329 Query 176619 ATTCCAAGCAGAGCACAACATTCTAATGCACCCATT 176654 |||||| || ||||||||||| || ||||||||||| Sbjct 1328 ATTCCAGGCTGAGCACAACATCCTTATGCACCCATT 1293 >seq533404 Length=557 Score = 156 bits (172), Expect = 5e-33 Identities = 166/219 (76%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 176881 TTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTGGTTTACTGCAATGGGTGTTTGCACA 176940 |||||||| || || | || || || | |||||||| ||||| | ||| | |||| Sbjct 530 TTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACT 471 Query 176941 ATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCTTAGACAACTCTGGTAAA 177000 ||||| |||||||| || |||||||| |||||||| || || | || | || Sbjct 470 ATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCGGTAGTTGATAGTCAAGGCCGT 411 Query 177001 GTGATTCCTACATGGGGAGATATCCTTAACCGTGCAAACCTTGGTATGGAAGTTATGCAC 177060 || ||| ||| |||| |||||| |||||||||| ||||||||||||||||||||||| Sbjct 410 GTAATTAATACTTGGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCAT 351 Query 177061 GAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCT 177099 || ||||||||||| || ||||| || ||| | |||||| Sbjct 350 GAACGTAATGCTCATAATTTCCCTCTAGACTTAGCTGCT 312 >seq188 Length=16035 Score = 134 bits (148), Expect = 2e-26 Identities = 204/287 (71%), Gaps = 4/287 (1%) Strand=Plus/Minus Query 19295 ACCTGTAACAGTACAGTATCCTTACGAGAAACTCATACCGTCAGAGAGATACCGTGGTCG 19354 ||||||||| | || || || ||||| ||| | || | || ||| | | ||| || || Sbjct 9426 ACCTGTAACTATTCAATACCCCTACGAAAAATTGATCACATCCGAGCGTTTCCGCGGACG 9367 Query 19355 TATACACTATGAGTTTGACAAGTGTATCGCCTGTGAGGTGTGTGTAAGAGTATGCCCTAT 19414 || |||| ||| ||||| || || || || ||||| || ||||| | ||||| ||||| Sbjct 9366 AATCCACTTTGAATTTGATAAATGCATTGCTTGTGAAGTATGTGTTCGTGTATGTCCTAT 9307 Query 19415 CAATCTACCAGTGGTGGATTGGGTGATGAACAAACAGACAA-AGAA-GAAAGAACTTAGA 19472 || | || || || |||||| || | ||| || | |||| |||| | | Sbjct 9306 AGATTTGCCCGTTGTTGATTGGAAATTGGA--AACTGATATTAGAAAGAAACGATTGCTT 9249 Query 19473 AATTATTCGATAGACTTTGGAGCATGTATTTTCTGCGGTAACTGCGTAGAGTATTGCCCA 19532 ||||| || || || ||| |||||| || || ||||| ||||| |||||||| ||| Sbjct 9248 AATTACAGTATTGATTTCGGAATATGTATATTTTGTGGTAATTGCGTTGAGTATTGTCCA 9189 Query 19533 ACAAACTGTCTATCCATGACAGAAGAATATGAATTGGCTACATTTGA 19579 ||||| ||| |||| ||||| |||||||||||| | |||| | ||| Sbjct 9188 ACAAATTGTTTATCAATGACTGAAGAATATGAACTTTCTACTTATGA 9142 >seq81374 Length=3119 Score = 113 bits (124), Expect = 5e-20 Identities = 100/125 (80%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 176533 GTTTTCCTCGTCTATCCATTCGGTCAAGGATCTTTCTCTGATGGTATGCCTCTTGGCATT 176592 |||||| | |||| ||| | ||||||||| || ||| ||||||||||||| | ||| Sbjct 632 GTTTTCTTAATCTACCCAATTGGTCAAGGAAGCTTTTCTAATGGTATGCCTCTATGAATT 573 Query 176593 TCAGGTACATTCAACTTTATGTTTGTATTCCAAGCAGAGCACAACATTCTAATGCACCCA 176652 | ||||| |||||||| ||| ||||||||||||| || |||||||| || ||||| ||| Sbjct 572 TTTGGTACTTTCAACTTCATGATTGTATTCCAAGCCGAACACAACATCCTTATGCATCCA 513 Query 176653 TTCCA 176657 || || Sbjct 512 TTGCA 508 >seq10361 Length=7172 Score = 95.1 bits (104), Expect = 1e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 176953 CTTAACGGTTTCAACTTCAACCAGTCTGTCTTAGACAACTCTGGTAAAGTGATTCCTACA 177012 || || |||||||| |||||||| || || | || | ||| | || ||| ||| Sbjct 371 CTAAATGGTTTCAATTTCAACCAATCGGTAGTTGATAGTCAAGGTCATGTAATTAGTACT 312 Query 177013 TGGGGAGATATCCTTAACCGTGCAAACCTTGGTATGGAAGTTATGCACGAGCGTAATGCT 177072 |||| | ||| |||| ||| ||||||||||| ||||||||||| || ||||||||| Sbjct 311 TGGGCTGGAATCATTAATTTTGCTAACCTTGGTATCGAAGTTATGCATGAACGTAATGCT 252 Query 177073 CACAACTTCCCACTTGACCTTGCTGCT 177099 || || ||||| || ||| | |||||| Sbjct 251 CATAATTTCCCTCTAGACTTAGCTGCT 225 >seq71880 Length=3346 Score = 87.8 bits (96), Expect = 2e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 176577 TATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAAGCAGAGCACAA 176636 ||||||||| || |||| ||| | |||||||| | | ||| |||||| || |||||||| Sbjct 1573 TATGCCTCTAGGAATTTTTGGTGCTTTCAACTTCACGATTGCATTCCAGGCTGAGCACAA 1632 Query 176637 CATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGG 176684 ||| || ||||||||||| | ||||| || ||| ||||| || || Sbjct 1633 CATCCTTATGCACCCATTTCGAATGCTAGGCATAGTTGGTGTATTCGG 1680 >seq348021 Length=939 Score = 86.0 bits (94), Expect = 7e-12 Identities = 77/97 (79%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 176770 GGTTACAAATTCGGACAAGAAGAAGAGACATACAACATTGTAGCTGCACACGGTTACTTT 176829 ||||| | |||||| ||||||||||| || || || || ||||| || || ||||| ||| Sbjct 843 GGTTATAGATTCGGTCAAGAAGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTT 902 Query 176830 GGTCGTCTTATCTTCCAGTATGCTTCTTTCAATAACT 176866 || || | |||||||| |||||| |||||| |||| Sbjct 903 GGCCGATTGATCTTCCAATATGCTAGTTTCAACAACT 939 >seq59682 Length=3695 Score = 84.2 bits (92), Expect = 3e-11 Identities = 123/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 176218 TTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTAGCAGGATCTCTA 176277 || ||||| || || || | ||||| || ||||||| ||| | || | ||||||||| Sbjct 419 TTCATTGCTGCTCCTCCATTGGATATTGATCGTATTCGTGAATCTGTTTCTGGATCTCTA 478 Query 176278 CTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAACGCAATCGGACTA 176337 || ||||||||||| || || ||| | | | || | || || || || | Sbjct 479 CTTTATGGAAACAATATTATTCGAGGTGACATTATTCCTACTTCTGCAGCTATAGGTTTG 538 Query 176338 CACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGA 176391 || || |||||||| ||||||| |||| | ||||| |||||| | |||||||| Sbjct 539 CATTTTTACCCAATATGGGAAGTAGCATCCGTTGATGAATGGTTACACAATGGA 592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596885306515200