Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_028683.1 Length=177643 Score E Sequences producing significant alignments: (Bits) Value seq30067 129 7e-25 >seq30067 Length=5021 Score = 129 bits (142), Expect = 7e-25 Identities = 308/464 (66%), Gaps = 4/464 (1%) Strand=Plus/Minus Query 147729 AGGGCTGAATAATGTGATGTAGTCATTCTTAATAAGA--CGTTCTAACATCAGGTCATTA 147786 ||| || |||| ||| || | || ||| | |||| | | || |||| | | |||| Sbjct 3772 AGGACTAAATAGTGTTATTTGGT--TTCCTGATAACATTCTTTGATACATGAATTTATTA 3715 Query 147787 ATCTGGACGCCATAATCTAAGTGACGAATACGGTTCTCGTCTACACCTTTATTGTTTTTC 147846 || || | |||| || | ||||| | | || || || | || | |||||||| Sbjct 3714 ATTTGAATTGCATAGTCGACATGACGTACTCTATTTTCTTCAATTCCCCTGTTGTTTTTT 3655 Query 147847 AGAACGAGAAGGTTTTCGACTTCTAAATGCCAAATTGGATAGTACAATGTTGCTGCACCA 147906 | ||| | | ||||| ||||| |||||||| |||||||| | | ||||| || ||| Sbjct 3654 AAAACTAATAAATTTTCAACTTCAAAATGCCATATTGGATAAAAAATAGTTGCAGCTCCA 3595 Query 147907 CCACGTACACCACCTTGGGAACATGATTTAACAGAAGCTTGAATAGTTTTCCAGAATGGA 147966 || | ||||| ||||| ||||| ||||| |||| ||||| | ||| | || || Sbjct 3594 CCTCTAACACCTCCTTGAGAACAAGATTTTACAGCGCTTTGAAAATGTTTATAAAAAGGT 3535 Query 147967 ATCACGCCTGTGTGCTTAACTTCACCATGTCCAATCTTAGAACCTTCTGCACGAATCATA 148026 || || || || |||| || | || ||| | ||| ||| ||||| Sbjct 3534 ATACAACCAGTATGAAATGCTTCTCCGTTTCTAATAGGACTTCCTAATGCGCGAATTTGT 3475 Query 148027 CCAGCGTTAACACCAATACCAGCTCGTTTACTGATGTACTTAATGATTGAAGCATTTGTG 148086 || || |||| |||||| ||||| |||| | || |||| || || | |||| Sbjct 3474 CCTGCATTAATACCAATTCCAGCACGTTGGGAAACATATTTAACAATAGAGCTAGTTGTC 3415 Query 148087 GTATTAATCGAATCCAGTGAATCACCACCTTCAATAACAACACAACTCGAGAATTGACGA 148146 | |||||| |||| | |||| ||| |||||| | ||||||| ||||||||| Sbjct 3414 GCATTAATGGAATTTAAATTATCAGCACATTCAATTAAAACACAAGAACTAAATTGACGA 3355 Query 148147 GTCGGAGTACGAACACCTGCCATAATTGGAGTTGGCAGTGAAAT 148190 || ||||| | || || | ||||||||| ||||| | |||||| Sbjct 3354 GTAGGAGTTCTGACTCCAGACATAATTGGTGTTGGTAATGAAAT 3311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562105609426800