Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_028686.1 Length=166313 Score E Sequences producing significant alignments: (Bits) Value seq159469 190 2e-43 seq30067 183 3e-41 >seq159469 Length=1977 Score = 190 bits (210), Expect = 2e-43 Identities = 311/445 (70%), Gaps = 10/445 (2%) Strand=Plus/Plus Query 128640 TTATTAATCTGAACACCATAATCTAAATGACGAATACGGTTTTCATCTACACCTTTGTTG 128699 |||||||| |||| | ||||| | |||||| | | ||||| || | ||| | || Sbjct 1289 TTATTAATTTGAAGTGCGTAATCAATATGACGCACTCTATTTTCTTCAATTCCTCTATTA 1348 Query 128700 TTCTTAAGTACGAGGAGGTTTTCAACTTCCAAGTGCCAGATTGGATAGTACAGTGTCGCC 128759 || || | || | | |||||||||| || ||||| |||||||| | | || || Sbjct 1349 TTTTTTAAAACTAATAAACTTTCAACTTCAAAATGCCATATTGGATAAAAAATAGTTGCA 1408 Query 128760 GCGCCACCACGGACTCCGCCTTGGGAGCAGGATTTAACTGCTGTTTGGAAGTGCTTCCAG 128819 || || || | ||||||||||| || |||||||| || || |||| ||||| || | Sbjct 1409 GCTCCTCCTCTCACTCCGCCTTGTGAACAGGATTTTACGGCACTTTGAAAGTGTTTATAA 1468 Query 128820 AAAGGAATAACTCCAGTATGTTTGACTTCACCGAATCCAATTTTTGAACCTTCT---GCA 128876 ||||| ||| |||||||| |||||||| || ||| | || | || || Sbjct 1469 AAAGGTATACAACCAGTATGAAATGCTTCACCGTTTCTAATA---GGACTTCCTAACGCG 1525 Query 128877 CGAATCATACCTGCATTAATACCAATACCTGCACGCTTACTGATG--TATTTTGTAATTG 128934 ||||| || ||||||||||| || || ||||| | |||| ||||| ||| | Sbjct 1526 CGAATTTGTCCCGCATTAATACCGATTCCAGCACGTTG--TGATACATATTTAACAATAG 1583 Query 128935 ACGCAGCAGCTTCGTTAATTGAATTAAGACTATCACCGCCTTCAATAACCACGCATGAAC 128994 | || || | ||||| || || | | ||||| | | ||| || | || || |||| Sbjct 1584 AGCTAGTAGTAGCATTAATAGAGTTTAAATTATCAGCACATTCGATTAAAACACAAGAAC 1643 Query 128995 TAAACTGACGTGTCGGAGTACGAACACCAGACATAATTGGAGTTGGCAATGAAATCTTTT 129054 |||||||||| || ||||| || || ||||||||||| || ||||| |||||||| || Sbjct 1644 TAAACTGACGAGTAGGAGTTCGTACTCCAGACATAATGGGTGTTGGTAATGAAATTTTAA 1703 Query 129055 TAGTAGAAACTGCATCATAGAAACG 129079 |||||||| ||||| ||| ||||| Sbjct 1704 AAGTAGAAATTGCATTATAAAAACG 1728 >seq30067 Length=5021 Score = 183 bits (202), Expect = 3e-41 Identities = 305/441 (69%), Gaps = 0/441 (0%) Strand=Plus/Minus Query 128640 TTATTAATCTGAACACCATAATCTAAATGACGAATACGGTTTTCATCTACACCTTTGTTG 128699 |||||||| |||| |||| || | |||||| | | ||||| || | || ||||| Sbjct 3720 TTATTAATTTGAATTGCATAGTCGACATGACGTACTCTATTTTCTTCAATTCCCCTGTTG 3661 Query 128700 TTCTTAAGTACGAGGAGGTTTTCAACTTCCAAGTGCCAGATTGGATAGTACAGTGTCGCC 128759 || || | || | | ||||||||||| || ||||| |||||||| | | || || Sbjct 3660 TTTTTTAAAACTAATAAATTTTCAACTTCAAAATGCCATATTGGATAAAAAATAGTTGCA 3601 Query 128760 GCGCCACCACGGACTCCGCCTTGGGAGCAGGATTTAACTGCTGTTTGGAAGTGCTTCCAG 128819 || ||||| | || || ||||| || || ||||| || || |||| || || || | Sbjct 3600 GCTCCACCTCTAACACCTCCTTGAGAACAAGATTTTACAGCGCTTTGAAAATGTTTATAA 3541 Query 128820 AAAGGAATAACTCCAGTATGTTTGACTTCACCGAATCCAATTTTTGAACCTTCTGCACGA 128879 ||||| ||| |||||||| |||| ||| || ||| ||| ||| ||| Sbjct 3540 AAAGGTATACAACCAGTATGAAATGCTTCTCCGTTTCTAATAGGACTTCCTAATGCGCGA 3481 Query 128880 ATCATACCTGCATTAATACCAATACCTGCACGCTTACTGATGTATTTTGTAATTGACGCA 128939 || ||||||||||||||||| || ||||| | | ||||| ||| || | Sbjct 3480 ATTTGTCCTGCATTAATACCAATTCCAGCACGTTGGGAAACATATTTAACAATAGAGCTA 3421 Query 128940 GCAGCTTCGTTAATTGAATTAAGACTATCACCGCCTTCAATAACCACGCATGAACTAAAC 128999 | | | ||||| ||||| | | ||||| | | |||||| | || || |||||||| Sbjct 3420 GTTGTCGCATTAATGGAATTTAAATTATCAGCACATTCAATTAAAACACAAGAACTAAAT 3361 Query 129000 TGACGTGTCGGAGTACGAACACCAGACATAATTGGAGTTGGCAATGAAATCTTTTTAGTA 129059 ||||| || ||||| | || |||||||||||||| ||||| |||||||| || |||| Sbjct 3360 TGACGAGTAGGAGTTCTGACTCCAGACATAATTGGTGTTGGTAATGAAATTTTAAAAGTA 3301 Query 129060 GAAACTGCATCATAGAAACGA 129080 |||| |||| || |||||| Sbjct 3300 GAAATAGCATTGTAAAAACGA 3280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 526246662478800