Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_028773.1 Length=182145 Score E Sequences producing significant alignments: (Bits) Value seq159469 156 5e-33 seq118173 120 4e-22 seq493767 109 6e-19 seq200536 91.5 2e-13 >seq159469 Length=1977 Score = 156 bits (172), Expect = 5e-33 Identities = 206/283 (73%), Gaps = 2/283 (1%) Strand=Plus/Minus Query 18437 AACGCGCTGGTATCGGTATTAACGCTGGTCGAATTCGTGCGGAAGGAAGTCAAGTTCGCT 18496 |||| ||||| ||||||||||| || || | |||||| ||| |||||||| || | Sbjct 1562 AACGTGCTGGAATCGGTATTAATGCGGGACAAATTCGCGCGTTAGGAAGTCCTATTAGAA 1503 Query 18497 CTGGTGAAGTCAAACACACTGGTGTTATTCCATTCTGGAAACATTTCCAGACTGCTGTTA 18556 ||||||| || |||||| ||| || || | ||||| || || | ||| || | Sbjct 1502 ACGGTGAAGCATTTCATACTGGTTGTATACCTTTTTATAAACACTTTCAAAGTGCCGTAA 1443 Query 18557 AATCGTGTTCACAAGGCGGTGTTCGTGGTGGTGCGGCAACTCTGTATTATCCTATGTGGC 18616 |||| |||||||||||||| || | || || || |||||| | | |||||| || |||| Sbjct 1442 AATCCTGTTCACAAGGCGGAGTGAGAGGAGGAGCTGCAACTATTTTTTATCCAATATGGC 1383 Query 18617 ATCTTGAATTCGAAAAGCTGATT-GTTCTGAAAAATAACAAAGGTGTTGATGAAAACCGC 18675 || ||||| | | |||| | ||| ||| | |||||||| | ||| |||| ||||| | Sbjct 1382 ATTTTGAAGTTG-AAAGTTTATTAGTTTTAAAAAATAATAGAGGAATTGAAGAAAATAGA 1324 Query 18676 ATTCGTCAGCTTGATTATGGTCTACAAATCAATAAACTGATGT 18718 | ||||| ||||||| | || ||||| |||||| | |||| Sbjct 1323 GTGCGTCATATTGATTACGCACTTCAAATTAATAAATTAATGT 1281 >seq118173 Length=2464 Score = 120 bits (132), Expect = 4e-22 Identities = 240/352 (68%), Gaps = 8/352 (2%) Strand=Plus/Minus Query 20021 TAATCA-CTTAATGCAACCTATGTTTTTCGGTGATGAACCTGG---TATTGCGCGTTACG 20076 |||||| ||||| | ||||||||||||| || | ||||| |||||| | || | Sbjct 2389 TAATCAACTTAAAG-AACCTATGTTTTTTGGGCA---ACCTGTAAATATTGCTAGGTATG 2334 Query 20077 ATACCCAGAAACATGAAATGTTCGAAAACTTAATTGAAAAGCAGTTGAGTTTCTTCTGGC 20136 || || ||| || | || || ||| | ||||||||||| || || || || ||| Sbjct 2333 ATCAACAAAAATATAATATTTTTGAACAATTAATTGAAAAACAATTATCATTTTTTTGGA 2274 Query 20137 GTCCTGAAGAGGTTGACGTAACTCGTGATAAGATCGATTATGATAATTTACCAGAACATG 20196 | |||||||| | || | ||||||||| || |||| | | || ||||| | ||| Sbjct 2273 GACCTGAAGAAATAGATCTCTCTCGTGATAGAATAGATTTTCAAAACTTACCTAATAATG 2214 Query 20197 AAAAACATATCTTTACTTCCAATTTGAAGTATCAGAGCTTACTCGATACCGTTCAGGGAC 20256 |||||||||| |||| | ||||| || ||||| | ||||| ||| | |||| ||| Sbjct 2213 AAAAACATATTTTTATTAGTAATTTAAAATATCAAACATTACTTGATTCTATTCAAGGAA 2154 Query 20257 GTGCTCCTAACACTGCTTTTATGTCCATCGTATCTGATGTAACACTTGACACATGGATTC 20316 | ||||| | |||||| | | ||| | ||| | ||| || |||||| || Sbjct 2153 GAAGCCCTAATATAGCTTTTTTACCAATCATTTCTATTCCTGAACTAGAGACATGGGTTG 2094 Query 20317 CTACCTGGGCGTTCTCGGAGACAATCCACAGTCGTTCTTATACACACATTAT 20368 || ||| | || || || || || || |||||||||||| || || || Sbjct 2093 AAACATGGTCTTTTTCAGAAACTATACATTCTCGTTCTTATACTCATATAAT 2042 >seq493767 Length=615 Score = 109 bits (120), Expect = 6e-19 Identities = 237/351 (68%), Gaps = 8/351 (2%) Strand=Plus/Plus Query 20022 AATCA-CTTAATGCAACCTATGTTTTTCGGTGATGAACCTGG---TATTGCGCGTTACGA 20077 ||||| ||||| | ||||||||||||| || | ||||| |||||| || || || Sbjct 58 AATCAACTTAAAG-AACCTATGTTTTTTGGACA---ACCTGTAAATATTGCTCGATATGA 113 Query 20078 TACCCAGAAACATGAAATGTTCGAAAACTTAATTGAAAAGCAGTTGAGTTTCTTCTGGCG 20137 | || ||| || | || || ||| | |||||||||| || || || || ||| | Sbjct 114 TCAGCAAAAATATAATATATTTGAACAACTAATTGAAAAACAATTATCATTTTTTTGGAG 173 Query 20138 TCCTGAAGAGGTTGACGTAACTCGTGATAAGATCGATTATGATAATTTACCAGAACATGA 20197 ||||| || | || | || | ||| || |||| | | ||| |||| || ||||| Sbjct 174 ACCTGAGGAAATAGATCTTTCTAGAGATCGAATAGATTTTCAAAATCTACCGGATCATGA 233 Query 20198 AAAACATATCTTTACTTCCAATTTGAAGTATCAGAGCTTACTCGATACCGTTCAGGGACG 20257 |||||| || |||| | ||||| || ||||| | ||||| ||| | |||| ||| | Sbjct 234 AAAACACATTTTTATTAGTAATTTAAAATATCAAACATTACTTGATTCAATTCAAGGAAG 293 Query 20258 TGCTCCTAACACTGCTTTTATGTCCATCGTATCTGATGTAACACTTGACACATGGATTCC 20317 |||||| | |||||| | | || | ||| | | ||| || ||||||||| Sbjct 294 AAGTCCTAATATAGCTTTTTTACCTATTATTTCTATTCCAGAACTGGAAACATGGATTGA 353 Query 20318 TACCTGGGCGTTCTCGGAGACAATCCACAGTCGTTCTTATACACACATTAT 20368 || ||| | || || || || || || ||||||||||| || || || Sbjct 354 AACATGGTCTTTTTCAGAAACTATTCATTCACGTTCTTATACTCATATAAT 404 >seq200536 Length=1633 Score = 91.5 bits (100), Expect = 2e-13 Identities = 328/507 (65%), Gaps = 16/507 (3%) Strand=Plus/Minus Query 20597 CGTTAACGCACTGGAAGCAATTCGTTTCTATGTTTCGTTTGCTTGCACCTTTGCATTTGC 20656 |||||| | | ||||||||| | || ||||| |||||||| | ||||||||||| Sbjct 1605 CGTTAATGTTTTAGAAGCAATTAGATTTTATGTAAGTTTTGCTTGTTCATTTGCATTTGC 1546 Query 20657 AGAA-GATAAGAAAATGGAAGGCAGTGCTAAAATTATGCGTCTGATTGCGCGTGATGAAC 20715 |||| || || || ||||||||| ||| |||||||| | | || || || |||||| Sbjct 1545 AGAAAGAGAATTAA-TGGAAGGCAATGCAAAAATTATTAGATTAATAGCACGCGATGAAG 1487 Query 20716 AACTGCACTTGAAAGGCACACAATATATGCTGCGTATTTGGCAGCAA-GGTAAAGATGAT 20774 | || || | ||| || ||| |||| | | ||| ||||| | |||| || || Sbjct 1486 CTTTACATTTAACAGGAACTCAACATATTTTAAATCTTT-TAAGCAATGTTAAAAATAAT 1428 Query 20775 CCTGAAATGATCGAAATTGCCAAAGAGTGTGAAGAAGAAGCTGTTAAATTGTTCTTGGAA 20834 | ||| || || | ||| || || | |||||| | || | ||| || | Sbjct 1427 GAAAACATGGCAGATATCATTATAGAATGCAAAAATGAAGCTATCAATATATTCATGTTA 1368 Query 20835 GTTGCCGAACAAGAAAAAGAATGGATCGATCATCTGTTTAAATATGGAACAATGGCAACA 20894 | ||| |||||||||||| ||||| || || | ||| || |||| ||||| | | Sbjct 1367 GCTGCGGAACAAGAAAAAAAATGGGCTGAATATTTATTTCAAAATGGTTCAATGTTAGGA 1308 Query 20895 CTGAATCATAAAACTCTGAACAATTATGTGGACTATCTGACTCGTAGCCGAATGATTTCT 20954 | ||| | | | | | | || | || ||| | ||| || || ||| | | Sbjct 1307 TTAAATAAAGATATTATTTGTCAGTACATAGAATATATAACTAATATTCGTATGCATGCA 1248 Query 20955 GCTGGTCTT------CCATGTGATATTCCATCAATGCGTCATCCTATTCCATGGATTCGT 21008 ||| || |||| | | | | |||| | | |||||||| |||||| | Sbjct 1247 ATAGGTTTTAAAATGCCATTTAAAA----AACAAT--CTAACCCTATTCCTTGGATTAAT 1194 Query 21009 AAATGGTTGAACTCCGATTCTGTTCAAGTTGCAGCACAGGAAGCCGAACTTAGCTCTTAT 21068 | ||||| | ||||||| | | ||| ||| | || ||| | ||| |||| |||||| Sbjct 1193 GACTGGTTAACTTCCGATTATATACAAACTGCTCCTCAAGAAACAGAAATTAGTTCTTAT 1134 Query 21069 CTGATCGCGCAAATTGATCCGAAAGTA 21095 | | | |||||||||| || ||||| Sbjct 1133 TTAGTTGGGCAAATTGATTCGGAAGTA 1107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576354239538000