Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_028780.1 Length=167124 Score E Sequences producing significant alignments: (Bits) Value seq159469 232 7e-56 seq30067 212 7e-50 seq118173 118 1e-21 >seq159469 Length=1977 Score = 232 bits (256), Expect = 7e-56 Identities = 327/458 (71%), Gaps = 6/458 (1%) Strand=Plus/Minus Query 22756 ATGTTATTCGTTTTTATGAAGCAGTATCTACTCGACAGATTTCATTGCCAACTCCTATTA 22815 || ||| ||||||||| | ||| | |||||| | |||||||| ||||| || |||| Sbjct 1736 ATATTAAGCGTTTTTATAATGCAATTTCTACTTTTAAAATTTCATTACCAACACCCATTA 1677 Query 22816 TGGCTGGTTGTCGTACTCCGACTCGACAGTTTAGTTCATGCGTTGTTATTGAGGCAGGTG 22875 || |||| || ||||| ||||| ||||||||||| || ||| | || || | || Sbjct 1676 TGTCTGGAGTACGAACTCCTACTCGTCAGTTTAGTTCTTGTGTTTTAATCGAATGTGCTG 1617 Query 22876 ATTCATTAAAGTCTATCAATAAGGCTTCCGCT---TCAATTGTTGAATATATCTCTAAAC 22932 || ||||| ||||| ||| ||| | || || |||||| ||||| | || ||| Sbjct 1616 ATAATTTAAACTCTAT---TAATGCTACTACTAGCTCTATTGTTAAATATGTATCACAAC 1560 Query 22933 GCGCTGGAATTGGTATTAACGTTGGTATGATTCGTGCCGAAGGTTCTAAGATTGGCATGG 22992 | |||||||| |||||||| | || ||||| || ||| | ||| | | | Sbjct 1559 GTGCTGGAATCGGTATTAATGCGGGACAAATTCGCGCGTTAGGAAGTCCTATTAGAAACG 1500 Query 22993 GTGAAGTACGCCATACTGGTGTTATTCCTTTTTGGAAACATTTTCAGACTGCTGTTAAAT 23052 |||||| | ||||||||| ||| ||||||| ||||| ||||| | ||| || |||| Sbjct 1499 GTGAAGCATTTCATACTGGTTGTATACCTTTTTATAAACACTTTCAAAGTGCCGTAAAAT 1440 Query 23053 CATGTTCACAGGGCGGAATTCGTGGTGGCGCTGCTACTGCTTATTATCCTATTTGGCATT 23112 | |||||||| |||||| | | || || ||||| ||| || |||||| || ||||||| Sbjct 1439 CCTGTTCACAAGGCGGAGTGAGAGGAGGAGCTGCAACTATTTTTTATCCAATATGGCATT 1380 Query 23113 TGGAAGTTGAAAATCTTCTCGTTTTGAAAAATAACAAAGGTGTAGAAGAAAACCGCATTC 23172 | |||||||||| | | | ||||| |||||||| | ||| | |||||||| | | | Sbjct 1379 TTGAAGTTGAAAGTTTATTAGTTTTAAAAAATAATAGAGGAATTGAAGAAAATAGAGTGC 1320 Query 23173 GTCATATGGATTATGGTGTTCAACTGAATGATCTAATG 23210 ||||||| ||||| | ||||| | ||| | ||||| Sbjct 1319 GTCATATTGATTACGCACTTCAAATTAATAAATTAATG 1282 >seq30067 Length=5021 Score = 212 bits (234), Expect = 7e-50 Identities = 322/456 (71%), Gaps = 2/456 (0%) Strand=Plus/Plus Query 22747 GATTAAAACATGTTATTCGTTTTTATGAAGCAGTATCTACTCGACAGATTTCATTGCCAA 22806 || |||| || || ||||||||| | || | |||||| | |||||||| |||| Sbjct 3264 GAATAAATTATATTCATCGTTTTTACAATGCTATTTCTACTTTTAAAATTTCATTACCAA 3323 Query 22807 CTCCTATTATGGCTGGTTGTC-GTACTCCGACTCGACAGTTTAGTTCATGCGTTGTTATT 22865 | || |||||| |||| ||| | ||||| ||||| || |||||||| || ||| | ||| Sbjct 3324 CACCAATTATGTCTGGA-GTCAGAACTCCTACTCGTCAATTTAGTTCTTGTGTTTTAATT 3382 Query 22866 GAGGCAGGTGATTCATTAAAGTCTATCAATAAGGCTTCCGCTTCAATTGTTGAATATATC 22925 || | |||| ||||| || || ||| | | | || |||||| ||||| | Sbjct 3383 GAATGTGCTGATAATTTAAATTCCATTAATGCGACAACTAGCTCTATTGTTAAATATGTT 3442 Query 22926 TCTAAACGCGCTGGAATTGGTATTAACGTTGGTATGATTCGTGCCGAAGGTTCTAAGATT 22985 || |||| ||||||||||||||||| | || ||||| || ||| | ||| Sbjct 3443 TCCCAACGTGCTGGAATTGGTATTAATGCAGGACAAATTCGCGCATTAGGAAGTCCTATT 3502 Query 22986 GGCATGGGTGAAGTACGCCATACTGGTGTTATTCCTTTTTGGAAACATTTTCAGACTGCT 23045 | | || |||| | ||||||||| ||| ||||||| ||||||||||| | ||| Sbjct 3503 AGAAACGGAGAAGCATTTCATACTGGTTGTATACCTTTTTATAAACATTTTCAAAGCGCT 3562 Query 23046 GTTAAATCATGTTCACAGGGCGGAATTCGTGGTGGCGCTGCTACTGCTTATTATCCTATT 23105 || ||||| ||||| || || || || | ||||| ||||| ||| || |||||| || Sbjct 3563 GTAAAATCTTGTTCTCAAGGAGGTGTTAGAGGTGGAGCTGCAACTATTTTTTATCCAATA 3622 Query 23106 TGGCATTTGGAAGTTGAAAATCTTCTCGTTTTGAAAAATAACAAAGGTGTAGAAGAAAAC 23165 |||||||| |||||||||||| | | ||||| ||||| |||| || | |||||||| Sbjct 3623 TGGCATTTTGAAGTTGAAAATTTATTAGTTTTAAAAAACAACAGGGGAATTGAAGAAAAT 3682 Query 23166 CGCATTCGTCATATGGATTATGGTGTTCAACTGAAT 23201 | | |||||| | || |||| ||||| | ||| Sbjct 3683 AGAGTACGTCATGTCGACTATGCAATTCAAATTAAT 3718 >seq118173 Length=2464 Score = 118 bits (130), Expect = 1e-21 Identities = 299/445 (67%), Gaps = 16/445 (4%) Strand=Plus/Minus Query 24546 AAAGAACCTATGTTTTTTGGTTCAGGTCTTGGTATTGCGCGTTATGATATTCAACGCCAT 24605 |||||||||||||||||||| | | | |||||| | |||||| ||| || Sbjct 2379 AAAGAACCTATGTTTTTTGGGCAACCTGTAAATATTGCTAGGTATGATCAACAAAAATAT 2320 Query 24606 AAAGTTTTTGAAGATTTAACCGAAAAGCAATTATCATTTTTCTGGCGTCCTGAAGAAGTA 24665 || |||||||| | |||| ||||| |||||||||||||| ||| | ||||||||| || Sbjct 2319 AATATTTTTGAACAATTAATTGAAAAACAATTATCATTTTTTTGGAGACCTGAAGAAATA 2260 Query 24666 -AACT---TGATGATGGATGCTGCACAGTTTAATAAGCTTCCTCAGTATCAGCAAAATAT 24721 | || | |||| || | | ||| | || | ||| | || | || |||| Sbjct 2259 GATCTCTCTCGTGATAGA----ATAGATTTTCAAAACTTACCTAATAATGAAAAACATAT 2204 Query 24722 TTTTACTAATAATCTGAAGTATCAATCACTTTTGGATAGCATTCAGGGTCGTGCGCCGTC 24781 ||||| || |||| | || |||||| || | | ||| ||||| || | ||| | Sbjct 2203 TTTTATTAGTAATTTAAAATATCAAACATTACTTGATTCTATTCAAGGAAG-AAGCC--C 2147 Query 24782 TGCTGTA-CTTATGT--CATTAATTTCAGACCCAAGCCTTGATACATGGGTTGCTACGTG 24838 | | || ||| | | || | ||||| || || || |||||||||| || || Sbjct 2146 TAATATAGCTTTTTTACCAATCATTTCTATTCCTGAACTAGAGACATGGGTTGAAACATG 2087 Query 24839 GACTTTTAGTGAAACTATTCACTCTCGTTCATATACACATATCATGCGAAATCTT-TATA 24897 | ||||| |||||||| || |||||||| ||||| ||||| || |||| || | | Sbjct 2086 GTCTTTTTCAGAAACTATACATTCTCGTTCTTATACTCATATAATTAGAAACATTGTCAA 2027 Query 24898 CTGATCCATCGAAGGTATTTGATGAGATTGTATTAGATGAAGCTATTATGAAACGTGCTG 24957 || |||||| ||||||||||| ||| | | | || || ||||| | |||||| Sbjct 2026 CT-CTCCATCTGTAGTATTTGATGATATTATTTCAAATAAACATATTAATGATCGTGCTA 1968 Query 24958 AATCCATTGGACGTTATTATGATGA 24982 || ||| ||||||||||| Sbjct 1967 AAAATATTTCTATCTATTATGATGA 1943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 528813441470400